FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0596, 156 aa
  1>>>pF1KE0596 156 - 156 aa - 156 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6860+/-0.000559; mu= 15.9758+/- 0.034
 mean_var=64.4750+/-13.077, 0's: 0 Z-trim(113.4): 28  B-trim: 775 in 1/49
 Lambda= 0.159727
 statistics sampled from 14019 (14046) to 14019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.431), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS12164.1 PSPN gene_id:5623|Hs108|chr19          ( 156) 1099 260.7 2.6e-70
CCDS501.1 ARTN gene_id:9048|Hs108|chr1             ( 220)  319 81.1 4.3e-16
CCDS502.1 ARTN gene_id:9048|Hs108|chr1             ( 228)  319 81.1 4.4e-16
CCDS12151.1 NRTN gene_id:4902|Hs108|chr19          ( 197)  298 76.2 1.1e-14


>>CCDS12164.1 PSPN gene_id:5623|Hs108|chr19               (156 aa)
 initn: 1099 init1: 1099 opt: 1099  Z-score: 1375.9  bits: 260.7 E(32554): 2.6e-70
Smith-Waterman score: 1099; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KE0 MAVGKFLLGSLLLLSLQLGQGWGPDARGVPVADGEFSSEQVAKAGGTWLGTHRPLARLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAVGKFLLGSLLLLSLQLGQGWGPDARGVPVADGEFSSEQVAKAGGTWLGTHRPLARLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ALSGPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQGRAHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALSGPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQGRAHG
               70        80        90       100       110       120

              130       140       150      
pF1KE0 GPCCRPTRYTDVAFLDDRHRWQRLPQLSAAACGCGG
       ::::::::::::::::::::::::::::::::::::
CCDS12 GPCCRPTRYTDVAFLDDRHRWQRLPQLSAAACGCGG
              130       140       150      

>>CCDS501.1 ARTN gene_id:9048|Hs108|chr1                  (220 aa)
 initn: 327 init1: 162 opt: 319  Z-score: 402.5  bits: 81.1 E(32554): 4.3e-16
Smith-Waterman score: 319; 45.6% identity (60.8% similar) in 125 aa overlap (40-156:104-220)

      10        20        30        40        50        60         
pF1KE0 SLLLLSLQLGQGWGPDARGVPVADGEFSSEQVAKAGGTWLGTHRPLARLRRALSGPCQLW
                                     ..:.:::       : .: : : .  :.: 
CCDS50 CSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGG-------PGSRARAAGARGCRLR
            80        90       100       110              120      

      70        80        90       100       110         120       
pF1KE0 SLTLSVAELGLGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQG--RAHGG------
       :  . :  ::::. :.: : ::.:.::: : ::. : :.:: : : :  :   :      
CCDS50 SQLVPVRALGLGHRSDELVRFRFCSGSC-RRARSPHDLSLASLLGAGALRPPPGSRPVSQ
        130       140       150        160       170       180     

             130       140       150      
pF1KE0 PCCRPTRYTDVAFLDDRHRWQRLPQLSAAACGCGG
       ::::::::  :.:.:    :. . .:::.:::: :
CCDS50 PCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG
         190       200       210       220

>>CCDS502.1 ARTN gene_id:9048|Hs108|chr1                  (228 aa)
 initn: 307 init1: 162 opt: 319  Z-score: 402.3  bits: 81.1 E(32554): 4.4e-16
Smith-Waterman score: 319; 45.6% identity (60.8% similar) in 125 aa overlap (40-156:112-228)

      10        20        30        40        50        60         
pF1KE0 SLLLLSLQLGQGWGPDARGVPVADGEFSSEQVAKAGGTWLGTHRPLARLRRALSGPCQLW
                                     ..:.:::       : .: : : .  :.: 
CCDS50 CSGRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGG-------PGSRARAAGARGCRLR
              90       100       110              120       130    

      70        80        90       100       110         120       
pF1KE0 SLTLSVAELGLGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQG--RAHGG------
       :  . :  ::::. :.: : ::.:.::: : ::. : :.:: : : :  :   :      
CCDS50 SQLVPVRALGLGHRSDELVRFRFCSGSC-RRARSPHDLSLASLLGAGALRPPPGSRPVSQ
          140       150       160        170       180       190   

             130       140       150      
pF1KE0 PCCRPTRYTDVAFLDDRHRWQRLPQLSAAACGCGG
       ::::::::  :.:.:    :. . .:::.:::: :
CCDS50 PCCRPTRYEAVSFMDVNSTWRTVDRLSATACGCLG
           200       210       220        

>>CCDS12151.1 NRTN gene_id:4902|Hs108|chr19               (197 aa)
 initn: 323 init1: 168 opt: 298  Z-score: 377.0  bits: 76.2 E(32554): 1.1e-14
Smith-Waterman score: 298; 46.8% identity (68.5% similar) in 111 aa overlap (50-154:88-196)

      20        30        40        50        60        70         
pF1KE0 QGWGPDARGVPVADGEFSSEQVAKAGGTWLGTHRPLARLRRALSGPCQLWSLTLSVAELG
                                     : .:  :: : . . :: :  : . :.:::
CCDS12 RALLQGAPDAMELRELTPWAGRPPGPRRRAGPRRRRARARLG-ARPCGLRELEVRVSELG
        60        70        80        90        100       110      

      80        90       100       110            120       130    
pF1KE0 LGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQGR-----AHGGPCCRPTRYTD-VA
       :::::.: :.::::::.:  .::. . :.: ::. . :     ... :::::: : : :.
CCDS12 LGYASDETVLFRYCAGACEAAARV-YDLGLRRLRQRRRLRRERVRAQPCCRPTAYEDEVS
        120       130       140        150       160       170     

           140       150      
pF1KE0 FLDDRHRWQRLPQLSAAACGCGG
       ::: . :.. . .:::  :.:  
CCDS12 FLDAHSRYHTVHELSARECACV 
         180       190        




156 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:36:08 2016 done: Wed Nov  2 20:36:08 2016
 Total Scan time:  1.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]