FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0595, 170 aa
  1>>>pF1KE0595 170 - 170 aa - 170 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1208+/-0.000668; mu= 14.6844+/- 0.041
 mean_var=91.6771+/-19.309, 0's: 0 Z-trim(112.5): 176  B-trim: 1270 in 2/51
 Lambda= 0.133950
 statistics sampled from 13041 (13252) to 13041 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.407), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS77990.1 DUX4 gene_id:100288687|Hs108|chr4      ( 424)  926 188.4 4.6e-48


>>CCDS77990.1 DUX4 gene_id:100288687|Hs108|chr4           (424 aa)
 initn: 1124 init1: 926 opt: 926  Z-score: 976.4  bits: 188.4 E(32554): 4.6e-48
Smith-Waterman score: 926; 81.8% identity (90.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KE0 MALLTALDDTLPEEAQGPGRRMILLSTPSQSDALRACFERNLYPGIATKEELAQGIDIPE
       ::: :  :.::: ::.: :::  :. :::::.::::::::: ::::::.:.:::.: :::
CCDS77 MALPTPSDSTLPAEARGRGRRRRLVWTPSQSEALRACFERNPYPGIATRERLAQAIGIPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PRVQIWFQNERSCQLRQHRRQSRPWPGRRDPQKGRRKRTAITGSQTALLLRAFEKDRFPG
       :::::::::::: :::::::.:::::::: : .:::::::.:::::::::::::::::::
CCDS77 PRVQIWFQNERSRQLRQHRRESRPWPGRRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPG
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE0 IAAREELARETGLPESRIQIWFQNRRARHRGQSGRAPTQASIRCNAAPIG          
       ::::::::::::::::::::::::::::: ::.::::.::.  :.::: :          
CCDS77 IAAREELARETGLPESRIQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAPSWVAF
              130       140       150       160       170       180

CCDS77 AHTGAWGTGLPAPHVPCAPGALPQGAFVSQAARAAPALQPSQAAPAEGISQPAPARGDFA
              190       200       210       220       230       240




170 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:48:05 2016 done: Wed Nov  2 20:48:06 2016
 Total Scan time:  1.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]