FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0593, 247 aa
  1>>>pF1KE0593 247 - 247 aa - 247 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6624+/-0.000263; mu= 11.0254+/- 0.017
 mean_var=139.3690+/-28.639, 0's: 0 Z-trim(123.7): 13  B-trim: 2424 in 1/57
 Lambda= 0.108640
 statistics sampled from 44036 (44061) to 44036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.517), width:  16
 Scan time:  7.090

The best scores are:                                      opt bits E(85289)
NP_001041677 (OMIM: 611113) cementoblastoma-derive ( 247) 1749 284.3 1.3e-76


>>NP_001041677 (OMIM: 611113) cementoblastoma-derived pr  (247 aa)
 initn: 1749 init1: 1749 opt: 1749  Z-score: 1496.2  bits: 284.3 E(85289): 1.3e-76
Smith-Waterman score: 1749; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE0 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KAEVGIPAPHTSQEVRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAEVGIPAPHTSQEVRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPTGGAQTILSLWTWRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQNSNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPTGGAQTILSLWTWRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQNSNGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KVKTITPDVGLHQSLTSDPTVAVLRAKRAPEAHPPRSCSGSLTARVCHMGVCQGQGDTED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVKTITPDVGLHQSLTSDPTVAVLRAKRAPEAHPPRSCSGSLTARVCHMGVCQGQGDTED
              190       200       210       220       230       240

              
pF1KE0 GRMTLMG
       :::::::
NP_001 GRMTLMG
              




247 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:52:49 2016 done: Wed Nov  2 20:52:50 2016
 Total Scan time:  7.090 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]