FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0593, 247 aa
  1>>>pF1KE0593 247 - 247 aa - 247 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7424+/-0.000656; mu= 10.5852+/- 0.040
 mean_var=136.3988+/-27.114, 0's: 0 Z-trim(116.4): 11  B-trim: 0 in 0/50
 Lambda= 0.109817
 statistics sampled from 17032 (17041) to 17032 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.523), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS42108.1 CEMP1 gene_id:752014|Hs108|chr16       ( 247) 1749 287.2   7e-78


>>CCDS42108.1 CEMP1 gene_id:752014|Hs108|chr16            (247 aa)
 initn: 1749 init1: 1749 opt: 1749  Z-score: 1511.7  bits: 287.2 E(32554): 7e-78
Smith-Waterman score: 1749; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KE0 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGTSSTDSQQAGHRRCSTSNTSAENLTCLSLPGSPGKTAPLPGPAQAGAGQPLPKGCAAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KAEVGIPAPHTSQEVRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KAEVGIPAPHTSQEVRIHIRRLLSWAAPGACGLRSTPCALPQALPQARPCPGRWFFPGCS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPTGGAQTILSLWTWRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQNSNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPTGGAQTILSLWTWRHFLNWALQQREENSGRARRVPPVPRTAPVSKGEGSHPPQNSNGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KVKTITPDVGLHQSLTSDPTVAVLRAKRAPEAHPPRSCSGSLTARVCHMGVCQGQGDTED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KVKTITPDVGLHQSLTSDPTVAVLRAKRAPEAHPPRSCSGSLTARVCHMGVCQGQGDTED
              190       200       210       220       230       240

              
pF1KE0 GRMTLMG
       :::::::
CCDS42 GRMTLMG
              




247 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:52:48 2016 done: Wed Nov  2 20:52:49 2016
 Total Scan time:  2.500 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]