FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0589, 462 aa
  1>>>pF1KE0589 462 - 462 aa - 462 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6089+/-0.000834; mu= 16.5990+/- 0.050
 mean_var=121.9897+/-38.969, 0's: 0 Z-trim(108.0): 87  B-trim: 1289 in 2/49
 Lambda= 0.116121
 statistics sampled from 9798 (9959) to 9798 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.306), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS11698.1 GPR142 gene_id:350383|Hs108|chr17      ( 462) 3088 529.0 3.9e-150
CCDS32398.1 GPR139 gene_id:124274|Hs108|chr16      ( 353)  968 173.7 2.7e-43


>>CCDS11698.1 GPR142 gene_id:350383|Hs108|chr17           (462 aa)
 initn: 3088 init1: 3088 opt: 3088  Z-score: 2808.9  bits: 529.0 E(32554): 3.9e-150
Smith-Waterman score: 3088; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KE0 MSIMMLPMEQKIQWVPTSLQDITAVLGTEAYTEEDKSMVSHAQKSQHSCLSHSRWLRSPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSIMMLPMEQKIQWVPTSLQDITAVLGTEAYTEEDKSMVSHAQKSQHSCLSHSRWLRSPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VTGGSWDLRIRPSKDSSSFRQAQCLRKDPGANNHLESQGVRGTAGDADRELRGPSEKATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VTGGSWDLRIRPSKDSSSFRQAQCLRKDPGANNHLESQGVRGTAGDADRELRGPSEKATA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GQPRVTLLPTPHVSGLSQEFESHWPEIAERSPCVAGVIPVIYYSVLLGLGLPVSLLTAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GQPRVTLLPTPHVSGLSQEFESHWPEIAERSPCVAGVIPVIYYSVLLGLGLPVSLLTAVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LARLATRTRRPSYYYLLALTASDIIIQVVIVFAGFLLQGAVLARQVPQAVVRTANILEFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LARLATRTRRPSYYYLLALTASDIIIQVVIVFAGFLLQGAVLARQVPQAVVRTANILEFA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ANHASVWIAILLTVDRYTALCHPLHHRAASSPGRTRRAIAAVLSAALLTGIPFYWWLDMW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ANHASVWIAILLTVDRYTALCHPLHHRAASSPGRTRRAIAAVLSAALLTGIPFYWWLDMW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 RDTDSPRTLDEVLKWAHCLTVYFIPCGVFLVTNSAIIHRLRRRGRSGLQPRVGKSTAILL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDTDSPRTLDEVLKWAHCLTVYFIPCGVFLVTNSAIIHRLRRRGRSGLQPRVGKSTAILL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 GITTLFTLLWAPRVFVMLYHMYVAPVHRDWRVHLALDVANMVAMLHTAANFGLYCFVSKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GITTLFTLLWAPRVFVMLYHMYVAPVHRDWRVHLALDVANMVAMLHTAANFGLYCFVSKT
              370       380       390       400       410       420

              430       440       450       460  
pF1KE0 FRATVRQVIHDAYLPCTLASQPEGMAAKPVMEPPGLPTGAEV
       ::::::::::::::::::::::::::::::::::::::::::
CCDS11 FRATVRQVIHDAYLPCTLASQPEGMAAKPVMEPPGLPTGAEV
              430       440       450       460  

>>CCDS32398.1 GPR139 gene_id:124274|Hs108|chr16           (353 aa)
 initn: 938 init1: 646 opt: 968  Z-score: 890.8  bits: 173.7 E(32554): 2.7e-43
Smith-Waterman score: 968; 46.1% identity (77.1% similar) in 293 aa overlap (151-442:21-310)

              130       140       150       160       170       180
pF1KE0 GQPRVTLLPTPHVSGLSQEFESHWPEIAERSPCVAGVIPVIYYSVLLGLGLPVSLLTAVA
                                     : :  : .::.:::.:: ::::...::.. 
CCDS32           MEHTHAHLAANSSLSWWSPGSACGLGFVPVVYYSLLLCLGLPANILTVII
                         10        20        30        40        50

              190       200       210       220       230       240
pF1KE0 LARLATRTRRPSYYYLLALTASDIIIQVVIVFAGFLLQGAVLARQVPQAVVRTANILEFA
       :..:..: .. :: :::::.:.::..   :::. :::.  .:  :.::.  .  ..:::.
CCDS32 LSQLVARRQKSSYNYLLALAAADILVLFFIVFVDFLLEDFILNMQMPQVPDKIIEVLEFS
               60        70        80        90       100       110

              250       260       270       280       290       300
pF1KE0 ANHASVWIAILLTVDRYTALCHPLHHRAASSPGRTRRAIAAVLSAALLTGIPFYWWLDMW
       . :.:.::.. ::.::: :.::::.....: :.:::..:..:  . .::.::.::: ..:
CCDS32 SIHTSIWITVPLTIDRYIAVCHPLKYHTVSYPARTRKVIVSVYITCFLTSIPYYWWPNIW
              120       130       140       150       160       170

              310       320       330       340       350          
pF1KE0 RDTDSPRTLDEVLKWAHCLTVYFIPCGVFLVTNSAIIHRLRRRGRSGLQPR-VGKSTAIL
        .     .. .:: : ::.:::..::..:.. :: :...:::..   :.   .::.::::
CCDS32 TEDYISTSVHHVLIWIHCFTVYLVPCSIFFILNSIIVYKLRRKSNFRLRGYSTGKTTAIL
              180       190       200       210       220       230

     360       370       380       390       400       410         
pF1KE0 LGITTLFTLLWAPRVFVMLYHMYVAPVHRDWRVHLALDVANMVAMLHTAANFGLYCFVSK
       . ::..:. :::::....:::.: ::..  : ::.  :.:::.:.:.:: :: ::::.::
CCDS32 FTITSIFATLWAPRIIMILYHLYGAPIQNRWLVHIMSDIANMLALLNTAINFFLYCFISK
              240       250       260       270       280       290

     420       430       440       450       460                   
pF1KE0 TFRATVRQVIHDAYLPCTLASQPEGMAAKPVMEPPGLPTGAEV                 
        :: :.  .   :.. :   .::                                     
CCDS32 RFR-TMAAATLKAFFKCQ--KQPVQFYTNHNFSITSSPWISPANSHCIKMLVYQYDKNGK
               300         310       320       330       340       




462 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 20:58:15 2016 done: Wed Nov  2 20:58:16 2016
 Total Scan time:  2.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]