FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0584, 166 aa
  1>>>pF1KE0584 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3374+/-0.000528; mu= 13.5710+/- 0.032
 mean_var=75.2311+/-14.830, 0's: 0 Z-trim(115.6): 5  B-trim: 173 in 1/49
 Lambda= 0.147868
 statistics sampled from 16185 (16188) to 16185 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.497), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS35171.1 FAM163B gene_id:642968|Hs108|chr9      ( 166) 1126 248.1 1.9e-66
CCDS1333.1 FAM163A gene_id:148753|Hs108|chr1       ( 167)  378 88.5   2e-18


>>CCDS35171.1 FAM163B gene_id:642968|Hs108|chr9           (166 aa)
 initn: 1126 init1: 1126 opt: 1126  Z-score: 1306.5  bits: 248.1 E(32554): 1.9e-66
Smith-Waterman score: 1126; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE0 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLNGGER
               70        80        90       100       110       120

              130       140       150       160      
pF1KE0 VLYKSVSQEDVELPPGGFGGLQALNPNRLSAMREAFARSRSISTDV
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VLYKSVSQEDVELPPGGFGGLQALNPNRLSAMREAFARSRSISTDV
              130       140       150       160      

>>CCDS1333.1 FAM163A gene_id:148753|Hs108|chr1            (167 aa)
 initn: 337 init1: 266 opt: 378  Z-score: 444.1  bits: 88.5 E(32554): 2e-18
Smith-Waterman score: 378; 42.4% identity (62.9% similar) in 170 aa overlap (1-166:1-167)

               10        20        30        40            50      
pF1KE0 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESE----EDEEEPDFAVHSHLP
       :::::::::::::::::::::::::::::::::::::. .:    :.:.: :. .: . :
CCDS13 MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKSGTEVADEEEEREHDLPTHPRGP
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE0 PLHSNRNLVLTNGPALYPTASTSFSQKSPQARALCRSCSHCEPPTFFLQEPPEEEEDVLN
         ..  . .: .  .: : .:   ::    : . : .::    : :...      .   .
CCDS13 TCNACSSQALDGRGSLAPLTSEPCSQPCGVAASHCTTCSPYSSP-FYIRTADMVPNG--G
               70        80        90       100        110         

        120       130       140       150       160      
pF1KE0 GGERVLYKSVSQEDVELPPGGFGGLQALNPNRLSAMREAFARSRSISTDV
       ::::. .  .  ..   :   ... :.   .  .. ::::.  :.:::::
CCDS13 GGERLSFAPTYYKEGGPPSLKLAAPQSYPVTWPGSGREAFTNPRAISTDV
       120       130       140       150       160       




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:20:34 2016 done: Wed Nov  2 21:20:34 2016
 Total Scan time:  1.730 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]