FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0583, 272 aa
  1>>>pF1KE0583 272 - 272 aa - 272 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5644+/-0.000311; mu= 9.6455+/- 0.019
 mean_var=99.4361+/-19.711, 0's: 0 Z-trim(119.7): 4  B-trim: 51 in 1/55
 Lambda= 0.128618
 statistics sampled from 34043 (34047) to 34043 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.399), width:  16
 Scan time:  5.910

The best scores are:                                      opt bits E(85289)
NP_000408 (OMIM: 147730,601942,606367) interleukin ( 272) 1895 361.3 1.1e-99
NP_001295171 (OMIM: 147730,601942,606367) interleu ( 200)  871 171.3 1.3e-42
NP_001295172 (OMIM: 147730,601942,606367) interleu ( 176)  862 169.6 3.7e-42


>>NP_000408 (OMIM: 147730,601942,606367) interleukin-2 r  (272 aa)
 initn: 1895 init1: 1895 opt: 1895  Z-score: 1910.9  bits: 361.3 E(85289): 1.1e-99
Smith-Waterman score: 1895; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KE0 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LPGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QLICTGEMETSQFPGEEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QLICTGEMETSQFPGEEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
              190       200       210       220       230       240

              250       260       270  
pF1KE0 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
       ::::::::::::::::::::::::::::::::
NP_000 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
              250       260       270  

>>NP_001295171 (OMIM: 147730,601942,606367) interleukin-  (200 aa)
 initn: 887 init1: 870 opt: 871  Z-score: 886.1  bits: 171.3 E(85289): 1.3e-42
Smith-Waterman score: 1204; 73.5% identity (73.5% similar) in 272 aa overlap (1-272:1-200)

               10        20        30        40        50        60
pF1KE0 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP
       :::                                                         
NP_001 LPG---------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE0 QLICTGEMETSQFPGEEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
                      :::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---------------EEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
                          130       140       150       160        

              250       260       270  
pF1KE0 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
       ::::::::::::::::::::::::::::::::
NP_001 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
      170       180       190       200

>>NP_001295172 (OMIM: 147730,601942,606367) interleukin-  (176 aa)
 initn: 1185 init1: 862 opt: 862  Z-score: 877.9  bits: 169.6 E(85289): 3.7e-42
Smith-Waterman score: 997; 64.7% identity (64.7% similar) in 272 aa overlap (1-272:1-176)

               10        20        30        40        50        60
pF1KE0 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDSYLLMWGLLTFIMVPGCQAELCDDDPPEIPHATFKAMAYKEGTMLNCECKRGFRRIKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSLYMLCTGNSSHSSWDNQCQCTSSATRNTTKQVTPQPEEQKERKTTEMQSPMQPVDQAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPGHCREPPPWENEATERIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP
       ::                                                          
NP_001 LP----------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE0 QLICTGEMETSQFPGEEKPQASPEGRPESETSCLVTTTDFQIQTEMAATMETSIFTTEYQ
                                             ::::::::::::::::::::::
NP_001 --------------------------------------DFQIQTEMAATMETSIFTTEYQ
                                                  130       140    

              250       260       270  
pF1KE0 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
       ::::::::::::::::::::::::::::::::
NP_001 VAVAGCVFLLISVLLLSGLTWQRRQRKSRRTI
          150       160       170      




272 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:36:47 2016 done: Wed Nov  2 21:36:47 2016
 Total Scan time:  5.910 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]