FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0581, 283 aa
  1>>>pF1KE0581 283 - 283 aa - 283 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6876+/-0.000832; mu= 13.5224+/- 0.050
 mean_var=71.7759+/-14.272, 0's: 0 Z-trim(107.2): 12  B-trim: 0 in 0/50
 Lambda= 0.151386
 statistics sampled from 9437 (9439) to 9437 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.29), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS6941.2 FAM78A gene_id:286336|Hs108|chr9        ( 283) 1954 435.7 1.8e-122
CCDS30931.1 FAM78B gene_id:149297|Hs108|chr1       ( 261) 1311 295.3 3.2e-80


>>CCDS6941.2 FAM78A gene_id:286336|Hs108|chr9             (283 aa)
 initn: 1954 init1: 1954 opt: 1954  Z-score: 2312.2  bits: 435.7 E(32554): 1.8e-122
Smith-Waterman score: 1954; 100.0% identity (100.0% similar) in 283 aa overlap (1-283:1-283)

               10        20        30        40        50        60
pF1KE0 MPGFFCDCWPSLEIRALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MPGFFCDCWPSLEIRALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQP
              190       200       210       220       230       240

              250       260       270       280   
pF1KE0 KILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR
       :::::::::::::::::::::::::::::::::::::::::::
CCDS69 KILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR
              250       260       270       280   

>>CCDS30931.1 FAM78B gene_id:149297|Hs108|chr1            (261 aa)
 initn: 1311 init1: 1311 opt: 1311  Z-score: 1553.8  bits: 295.3 E(32554): 3.2e-80
Smith-Waterman score: 1311; 72.0% identity (88.5% similar) in 261 aa overlap (21-281:1-261)

               10        20        30        40        50        60
pF1KE0 MPGFFCDCWPSLEIRALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSV
                           :::::::  :::. ::.:.: :: :.::  :: :.:.: .
CCDS30                     MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPI
                                   10        20        30        40

               70        80        90       100       110       120
pF1KE0 VLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGK
       ::::.::.:.:::.:::::::..:::::::::::..:::.: :.. ::::::::::.::.
CCDS30 VLRYKTPYFKASARVVMPPIPRHETWVVGWIQACNQMEFFNTYSDLGMSSWELPDLREGR
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KE0 IQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKL
       ..::::::::.:::::::::: :.::::.. :.: .:::::::::::::::::.:::  :
CCDS30 VKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLL
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KE0 TNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQP
       : : ::::::::::: ::.:.. :::::..:::...:::.: . :::::::     :.::
CCDS30 TRIKRDQSFTTWLVAMNTTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQP
              170       180       190       200       210       220

              250       260       270       280   
pF1KE0 KILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR
       .:::. :::::.:::::::::::::::::: : ::::::::  
CCDS30 RILSRMEPIPPNALVKPNANDAQVLMWRPKRGPPLVVIPPK  
              230       240       250       260   




283 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:59:18 2016 done: Wed Nov  2 21:59:18 2016
 Total Scan time:  1.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]