FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0580, 156 aa
  1>>>pF1KE0580 156 - 156 aa - 156 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4240+/-0.0003; mu= 12.2408+/- 0.019
 mean_var=78.5312+/-16.113, 0's: 0 Z-trim(117.8): 2  B-trim: 366 in 1/53
 Lambda= 0.144728
 statistics sampled from 30130 (30132) to 30130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.353), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(85289)
NP_000975 (OMIM: 602326) 60S ribosomal protein L23 ( 156)  812 178.2 4.8e-45


>>NP_000975 (OMIM: 602326) 60S ribosomal protein L23a [H  (156 aa)
 initn: 812 init1: 812 opt: 812  Z-score: 929.7  bits: 178.2 E(85289): 4.8e-45
Smith-Waterman score: 812; 83.3% identity (91.7% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KE0 MALKAKKEAPASPEAEAKAKALKAKKAALKGVHSHIKKKTRTSLTFQRPKTLRRRRRPEY
       :: :::::::: :.:::::::::::::.::::::: ::: ::: ::.:::::: ::.:.:
NP_000 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PWKSTPRRNKLGHYAVIKFPLTTESAVKRTEENNTLLFTVDVKANKHQIKQAVKKLYDGD
       : ::.:::::: :::.::::::::::.:. :.::::.: ::::::::::::::::::: :
NP_000 PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID
               70        80        90       100       110       120

              130       140       150      
pF1KE0 VAEVTTLIPPDGEKKACVRLAPDYDALDVANKIGII
       ::.:.::: ::::::: :::::::::::::::::::
NP_000 VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
              130       140       150      




156 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:06:50 2016 done: Wed Nov  2 22:06:51 2016
 Total Scan time:  4.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]