FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0580, 156 aa
  1>>>pF1KE0580 156 - 156 aa - 156 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3576+/-0.000683; mu= 12.6882+/- 0.041
 mean_var=74.6831+/-14.959, 0's: 0 Z-trim(110.6): 8  B-trim: 5 in 2/51
 Lambda= 0.148410
 statistics sampled from 11722 (11724) to 11722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.36), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS11241.1 RPL23A gene_id:6147|Hs108|chr17        ( 156)  812 182.2 1.1e-46


>>CCDS11241.1 RPL23A gene_id:6147|Hs108|chr17             (156 aa)
 initn: 812 init1: 812 opt: 812  Z-score: 951.6  bits: 182.2 E(32554): 1.1e-46
Smith-Waterman score: 812; 83.3% identity (91.7% similar) in 156 aa overlap (1-156:1-156)

               10        20        30        40        50        60
pF1KE0 MALKAKKEAPASPEAEAKAKALKAKKAALKGVHSHIKKKTRTSLTFQRPKTLRRRRRPEY
       :: :::::::: :.:::::::::::::.::::::: ::: ::: ::.:::::: ::.:.:
CCDS11 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PWKSTPRRNKLGHYAVIKFPLTTESAVKRTEENNTLLFTVDVKANKHQIKQAVKKLYDGD
       : ::.:::::: :::.::::::::::.:. :.::::.: ::::::::::::::::::: :
CCDS11 PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID
               70        80        90       100       110       120

              130       140       150      
pF1KE0 VAEVTTLIPPDGEKKACVRLAPDYDALDVANKIGII
       ::.:.::: ::::::: :::::::::::::::::::
CCDS11 VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
              130       140       150      




156 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:06:50 2016 done: Wed Nov  2 22:06:50 2016
 Total Scan time:  1.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]