FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0574, 290 aa
  1>>>pF1KE0574 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5272+/-0.000825; mu= 9.8119+/- 0.050
 mean_var=93.4786+/-19.187, 0's: 0 Z-trim(109.0): 11  B-trim: 39 in 1/52
 Lambda= 0.132653
 statistics sampled from 10612 (10620) to 10612 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.326), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS43225.1 GRXCR1 gene_id:389207|Hs108|chr4       ( 290) 1969 386.7 1.1e-107


>>CCDS43225.1 GRXCR1 gene_id:389207|Hs108|chr4            (290 aa)
 initn: 1969 init1: 1969 opt: 1969  Z-score: 2046.8  bits: 386.7 E(32554): 1.1e-107
Smith-Waterman score: 1969; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KE0 MLKREMKPESDRPRKVRFRIASSHSGRVLKEVYEDGQPSGSLDSECASICGIDGLGDSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MLKREMKPESDRPRKVRFRIASSHSGRVLKEVYEDGQPSGSLDSECASICGIDGLGDSDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QQNGHIESEGDENENDQDSLLVLARAASEKGFGTRRVNILSKNGTVRGVKYKVSAGQALF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QQNGHIESEGDENENDQDSLLVLARAASEKGFGTRRVNILSKNGTVRGVKYKVSAGQALF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NNLTKVLQQPSTDLEFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NNLTKVLQQPSTDLEFDRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 YGKELDERCRRVSEAPSLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YGKELDERCRRVSEAPSLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECP
              190       200       210       220       230       240

              250       260       270       280       290
pF1KE0 SCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALKCTACNENGLQRCKNCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SCGGFGFLPCSVCHGSKMSMFRNCFTDSFKALKCTACNENGLQRCKNCAG
              250       260       270       280       290




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:38:32 2016 done: Wed Nov  2 22:38:33 2016
 Total Scan time:  2.230 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]