FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0571, 188 aa
  1>>>pF1KE0571 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2982+/-0.000328; mu= 13.2949+/- 0.021
 mean_var=65.2426+/-13.004, 0's: 0 Z-trim(114.5): 18  B-trim: 0 in 0/54
 Lambda= 0.158785
 statistics sampled from 24418 (24426) to 24418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.286), width:  16
 Scan time:  4.650

The best scores are:                                      opt bits E(85289)
NP_057617 (OMIM: 607297) ninjurin-2 isoform 1 [Hom ( 188) 1188 280.5 1.1e-75
NP_001281274 (OMIM: 607297) ninjurin-2 isoform 2 [ ( 135)  810 193.8 9.8e-50
NP_001281275 (OMIM: 607297) ninjurin-2 isoform 3 [ ( 106)  645 156.0 1.9e-38
NP_004139 (OMIM: 602062) ninjurin-1 [Homo sapiens] ( 152)  431 107.0 1.5e-23
XP_011517018 (OMIM: 602062) PREDICTED: ninjurin-1  ( 102)  333 84.5   6e-17


>>NP_057617 (OMIM: 607297) ninjurin-2 isoform 1 [Homo sa  (188 aa)
 initn: 1188 init1: 1188 opt: 1188  Z-score: 1479.7  bits: 280.5 E(85289): 1.1e-75
Smith-Waterman score: 1188; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE0 MAGLSRQLCALSHPKKAAETQTAEPGGAHAVCSRHPVRVKGLEGSEMESARENIDLQPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAGLSRQLCALSHPKKAAETQTAEPGGAHAVCSRHPVRVKGLEGSEMESARENIDLQPGS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SDPRSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SDPRSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFGAHKTGFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFGAHKTGFLA
              130       140       150       160       170       180

               
pF1KE0 ARASRNPL
       ::::::::
NP_057 ARASRNPL
               

>>NP_001281274 (OMIM: 607297) ninjurin-2 isoform 2 [Homo  (135 aa)
 initn: 810 init1: 810 opt: 810  Z-score: 1013.9  bits: 193.8 E(85289): 9.8e-50
Smith-Waterman score: 810; 100.0% identity (100.0% similar) in 131 aa overlap (58-188:5-135)

        30        40        50        60        70        80       
pF1KE0 AHAVCSRHPVRVKGLEGSEMESARENIDLQPGSSDPRSQPINLNHYATKKSVAESMLDVA
                                     ::::::::::::::::::::::::::::::
NP_001                           MMYMPGSSDPRSQPINLNHYATKKSVAESMLDVA
                                         10        20        30    

        90       100       110       120       130       140       
pF1KE0 LFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRL
           40        50        60        70        80        90    

       150       160       170       180        
pF1KE0 NQLNNAATILVFFTVVINVFITAFGAHKTGFLAARASRNPL
       :::::::::::::::::::::::::::::::::::::::::
NP_001 NQLNNAATILVFFTVVINVFITAFGAHKTGFLAARASRNPL
          100       110       120       130     

>>NP_001281275 (OMIM: 607297) ninjurin-2 isoform 3 [Homo  (106 aa)
 initn: 645 init1: 645 opt: 645  Z-score: 811.2  bits: 156.0 E(85289): 1.9e-38
Smith-Waterman score: 645; 100.0% identity (100.0% similar) in 106 aa overlap (83-188:1-106)

             60        70        80        90       100       110  
pF1KE0 NIDLQPGSSDPRSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTL
                                     ::::::::::::::::::::::::::::::
NP_001                               MLDVALFMSNAMRLKAVLEQGPSSHYYTTL
                                             10        20        30

            120       130       140       150       160       170  
pF1KE0 VTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFG
               40        50        60        70        80        90

            180        
pF1KE0 AHKTGFLAARASRNPL
       ::::::::::::::::
NP_001 AHKTGFLAARASRNPL
              100      

>>NP_004139 (OMIM: 602062) ninjurin-1 [Homo sapiens]      (152 aa)
 initn: 455 init1: 421 opt: 431  Z-score: 543.9  bits: 107.0 E(85289): 1.5e-23
Smith-Waterman score: 432; 53.1% identity (76.9% similar) in 143 aa overlap (47-175:1-143)

         20        30        40        50               60         
pF1KE0 AAETQTAEPGGAHAVCSRHPVRVKGLEGSEMESARENIDLQ-------PGSSD--P----
                                     :.:. :. .:.       ::: :  :    
NP_004                               MDSGTEEYELNGGLPPGTPGSPDASPARWG
                                             10        20        30

             70        80        90       100       110       120  
pF1KE0 -RSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLL
        :  :::.::::.:::.::::::.::.:.:: .::::.:::::  .:. ::.:::.::.:
NP_004 WRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPLVVLISISLVL
               40        50        60        70        80        90

            130       140       150       160       170       180  
pF1KE0 QVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFGAHKTGFLAAR
       :. .::::. ... .::.  :. .:. ::: :: :::. ::.:.::::::..:       
NP_004 QIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPLMDMAP
              100       110       120       130       140       150

             
pF1KE0 ASRNPL
             
NP_004 QQ    
             

>>XP_011517018 (OMIM: 602062) PREDICTED: ninjurin-1 isof  (102 aa)
 initn: 351 init1: 333 opt: 333  Z-score: 425.2  bits: 84.5 E(85289): 6e-17
Smith-Waterman score: 333; 57.0% identity (84.9% similar) in 93 aa overlap (83-175:1-93)

             60        70        80        90       100       110  
pF1KE0 NIDLQPGSSDPRSQPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTL
                                     :::.::.:.:: .::::.:::::  .:. :
XP_011                               MLDIALLMANASQLKAVVEQGPSFAFYVPL
                                             10        20        30

            120       130       140       150       160       170  
pF1KE0 VTLISLSLLLQVVIGVLLVVIARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAFG
       :.:::.::.::. .::::. ... .::.  :. .:. ::: :: :::. ::.:.::::::
XP_011 VVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFG
               40        50        60        70        80        90

            180        
pF1KE0 AHKTGFLAARASRNPL
       ..:             
XP_011 VQKPLMDMAPQQ    
              100      




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:46:14 2016 done: Wed Nov  2 22:46:14 2016
 Total Scan time:  4.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]