Result of FASTA (omim) for
pF1KE0570
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0570, 246 aa
1>>>pF1KE0570 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2528+/-0.000313; mu= 14.5576+/- 0.019
mean_var=67.4763+/-14.121, 0's: 0 Z-trim(116.5): 69 B-trim: 1485 in 1/55
Lambda= 0.156134
statistics sampled from 27628 (27702) to 27628 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.325), width: 16
Scan time: 5.710
The best scores are: opt bits E(85289)
NP_570970 (OMIM: 611047) retinoic acid early trans ( 246) 1701 391.7 6.3e-109
XP_011533788 (OMIM: 611047) PREDICTED: retinoic ac ( 246) 1701 391.7 6.3e-109
NP_079493 (OMIM: 605698) NKG2D ligand 2 preproprot ( 246) 1593 367.4 1.3e-101
XP_011534102 (OMIM: 609244) PREDICTED: retinoic ac ( 297) 1445 334.1 1.7e-91
NP_001001788 (OMIM: 609244) retinoic acid early tr ( 334) 1445 334.1 1.8e-91
XP_016866320 (OMIM: 609244) PREDICTED: retinoic ac ( 338) 1445 334.1 1.9e-91
XP_016866810 (OMIM: 605698) PREDICTED: NKG2D ligan ( 211) 1359 314.6 8.6e-86
NP_079494 (OMIM: 605697) NKG2D ligand 1 isoform 1 ( 244) 1003 234.5 1.3e-61
XP_016866811 (OMIM: 605697) PREDICTED: NKG2D ligan ( 211) 927 217.3 1.7e-56
NP_078794 (OMIM: 605699) NKG2D ligand 3 [Homo sapi ( 244) 823 193.9 2.1e-49
XP_011533780 (OMIM: 609243) PREDICTED: NKG2D ligan ( 255) 438 107.2 2.8e-23
XP_016865776 (OMIM: 609243) PREDICTED: NKG2D ligan ( 257) 438 107.2 2.9e-23
XP_016865775 (OMIM: 609243) PREDICTED: NKG2D ligan ( 257) 438 107.2 2.9e-23
XP_016865774 (OMIM: 609243) PREDICTED: NKG2D ligan ( 257) 438 107.2 2.9e-23
NP_631904 (OMIM: 609243) NKG2D ligand 4 isoform 1 ( 263) 438 107.2 2.9e-23
XP_011533778 (OMIM: 609243) PREDICTED: NKG2D ligan ( 271) 438 107.2 3e-23
XP_011533777 (OMIM: 609243) PREDICTED: NKG2D ligan ( 271) 438 107.2 3e-23
NP_001230256 (OMIM: 609243) NKG2D ligand 4 isoform ( 209) 433 106.0 5.3e-23
NP_001230257 (OMIM: 609243) NKG2D ligand 4 isoform ( 212) 433 106.0 5.3e-23
XP_011533781 (OMIM: 609243) PREDICTED: NKG2D ligan ( 212) 433 106.0 5.3e-23
NP_001230254 (OMIM: 609243) NKG2D ligand 4 isoform ( 227) 337 84.4 1.8e-16
XP_016865777 (OMIM: 609243) PREDICTED: NKG2D ligan ( 202) 322 81.0 1.7e-15
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 253 65.6 1.2e-10
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 253 65.6 1.3e-10
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 253 65.6 1.3e-10
NP_001181929 (OMIM: 600764) major histocompatibili ( 249) 236 61.7 1.4e-09
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 234 61.3 2.4e-09
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 231 60.7 3.8e-09
NP_001181964 (OMIM: 600764) major histocompatibili ( 214) 227 59.6 5e-09
XP_006711349 (OMIM: 600764) PREDICTED: major histo ( 312) 227 59.7 6.8e-09
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 227 59.8 7.3e-09
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 216 57.3 3.6e-08
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 206 55.0 1.9e-07
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 206 55.0 2e-07
NP_001297142 (OMIM: 600764) major histocompatibili ( 178) 199 53.3 3.4e-07
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 194 52.3 1.3e-06
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 194 52.3 1.3e-06
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 193 52.1 1.7e-06
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 193 52.1 1.7e-06
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 192 51.9 1.8e-06
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 189 51.2 2.9e-06
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 189 51.2 2.9e-06
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 180 49.1 8.8e-06
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 176 48.3 2.2e-05
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 176 48.3 2.3e-05
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 173 47.6 3.4e-05
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 168 46.5 7.3e-05
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 164 45.5 0.00011
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 165 45.8 0.00012
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 159 44.5 0.00032
>>NP_570970 (OMIM: 611047) retinoic acid early transcrip (246 aa)
initn: 1701 init1: 1701 opt: 1701 Z-score: 2076.6 bits: 391.7 E(85289): 6.3e-109
Smith-Waterman score: 1701; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
190 200 210 220 230 240
pF1KE0 FILPGI
::::::
NP_570 FILPGI
>>XP_011533788 (OMIM: 611047) PREDICTED: retinoic acid e (246 aa)
initn: 1701 init1: 1701 opt: 1701 Z-score: 2076.6 bits: 391.7 E(85289): 6.3e-109
Smith-Waterman score: 1701; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
190 200 210 220 230 240
pF1KE0 FILPGI
::::::
XP_011 FILPGI
>>NP_079493 (OMIM: 605698) NKG2D ligand 2 preproprotein (246 aa)
initn: 1593 init1: 1593 opt: 1593 Z-score: 1945.1 bits: 367.4 E(85289): 1.3e-101
Smith-Waterman score: 1593; 94.3% identity (95.9% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::: .:::::::.:: ::::: : ::::::::::::::::::::::::::::::::
NP_079 MAAAAATKILLCLPLLLLLSGWSRAGRADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
:::::::::::::::::::::::: :::::::::::::::::::: ::::::::::::::
NP_079 FLHYDCGNKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLRDIQLENYTPKEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::::::::::::::::.::: ::::::::::::::::::::::::::::: :::
NP_079 LQARMSCEQKAEGHSSGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWENDKVVAM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 SFHYFSMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
190 200 210 220 230 240
pF1KE0 FILPGI
::::::
NP_079 FILPGI
>>XP_011534102 (OMIM: 609244) PREDICTED: retinoic acid e (297 aa)
initn: 1463 init1: 1441 opt: 1445 Z-score: 1763.7 bits: 334.1 E(85289): 1.7e-91
Smith-Waterman score: 1445; 86.8% identity (93.8% similar) in 243 aa overlap (1-243:1-241)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::: ::.:: ::::.:: .: :. ::::::::::::::::::::::::::::::::
XP_011 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
:::::::.:::::::::::::::: :::::::::::::::::::::::::::: ::::::
XP_011 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::::::::.:::::.:.::: :::::::.::::::::::::::::::::::..:
XP_011 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
:::::::::: ::::::::::::::::::::: .:::::.: ::::::::::::::. :
XP_011 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIM--C
190 200 210 220 230
pF1KE0 FILPGI
...
XP_011 LLICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDRKNQAMQRQELKGHGEK
240 250 260 270 280 290
>>NP_001001788 (OMIM: 609244) retinoic acid early transc (334 aa)
initn: 1463 init1: 1441 opt: 1445 Z-score: 1763.0 bits: 334.1 E(85289): 1.8e-91
Smith-Waterman score: 1445; 86.8% identity (93.8% similar) in 243 aa overlap (1-243:1-241)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::: ::.:: ::::.:: .: :. ::::::::::::::::::::::::::::::::
NP_001 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
:::::::.:::::::::::::::: :::::::::::::::::::::::::::: ::::::
NP_001 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::::::::.:::::.:.::: :::::::.::::::::::::::::::::::..:
NP_001 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
:::::::::: ::::::::::::::::::::: .:::::.: ::::::::::::::. :
NP_001 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIM--C
190 200 210 220 230
pF1KE0 FILPGI
...
NP_001 LLICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDSYQIAKRPLSGGHVTRVT
240 250 260 270 280 290
>>XP_016866320 (OMIM: 609244) PREDICTED: retinoic acid e (338 aa)
initn: 1463 init1: 1441 opt: 1445 Z-score: 1762.9 bits: 334.1 E(85289): 1.9e-91
Smith-Waterman score: 1445; 86.8% identity (93.8% similar) in 243 aa overlap (1-243:1-241)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::: ::.:: ::::.:: .: :. ::::::::::::::::::::::::::::::::
XP_016 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
:::::::.:::::::::::::::: :::::::::::::::::::::::::::: ::::::
XP_016 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::::::::.:::::.:.::: :::::::.::::::::::::::::::::::..:
XP_016 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
:::::::::: ::::::::::::::::::::: .:::::.: ::::::::::::::. :
XP_016 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIM--C
190 200 210 220 230
pF1KE0 FILPGI
...
XP_016 LLICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDRYGGRIGSGAKGRWVRRE
240 250 260 270 280 290
>>XP_016866810 (OMIM: 605698) PREDICTED: NKG2D ligand 2 (211 aa)
initn: 1359 init1: 1359 opt: 1359 Z-score: 1661.2 bits: 314.6 E(85289): 8.6e-86
Smith-Waterman score: 1359; 93.3% identity (95.2% similar) in 210 aa overlap (1-210:1-210)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::: .:::::::.:: ::::: : ::::::::::::::::::::::::::::::::
XP_016 MAAAAATKILLCLPLLLLLSGWSRAGRADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
:::::::::::::::::::::::: :::::::::::::::::::: ::::::::::::::
XP_016 FLHYDCGNKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLRDIQLENYTPKEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::::::::::::::::.::: ::::::::::::::::::::::::::::: :::
XP_016 LQARMSCEQKAEGHSSGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWENDKVVAM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
::::.:::::::::::::::::::::::::
XP_016 SFHYFSMGDCIGWLEDFLMGMDSTLEPSAGG
190 200 210
>>NP_079494 (OMIM: 605697) NKG2D ligand 1 isoform 1 prec (244 aa)
initn: 1027 init1: 927 opt: 1003 Z-score: 1226.9 bits: 234.5 E(85289): 1.3e-61
Smith-Waterman score: 1003; 60.4% identity (78.0% similar) in 245 aa overlap (1-245:1-243)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::: ::.::::::: :: ::::: : : ::::. . :: :: :.:: ::: :::.
NP_079 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
:::::: :. . . ::::.::: .:. :. .::.:::.: ::::::.:: : ::::
NP_079 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::..:.::. ::::: ..:: ::::::..: ::..::::.:: ::::...::.:
NP_079 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
:. ::.::: :::.::: .. :.:. : ... :::: .: :::: ::::. :
NP_079 FFQKISLGDCKMWLEEFLMYWEQMLDPT--KPPSLAPGTTQPKAMATTLSPWSLLIIFLC
190 200 210 220 230
pF1KE0 FILPGI
::: :
NP_079 FILAGR
240
>>XP_016866811 (OMIM: 605697) PREDICTED: NKG2D ligand 1 (211 aa)
initn: 951 init1: 927 opt: 927 Z-score: 1135.3 bits: 217.3 E(85289): 1.7e-56
Smith-Waterman score: 927; 61.9% identity (80.5% similar) in 210 aa overlap (1-210:1-210)
10 20 30 40 50 60
pF1KE0 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
::::: ::.::::::: :: ::::: : : ::::. . :: :: :.:: ::: :::.
XP_016 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT
:::::: :. . . ::::.::: .:. :. .::.:::.: ::::::.:: : ::::
XP_016 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM
::::::::..:.::. ::::: ..:: ::::::..: ::..::::.:: ::::...::.:
XP_016 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILPC
:. ::.::: :::.::: .. :.:..:
XP_016 FFQKISLGDCKMWLEEFLMYWEQMLDPTSGK
190 200 210
>>NP_078794 (OMIM: 605699) NKG2D ligand 3 [Homo sapiens] (244 aa)
initn: 753 init1: 707 opt: 823 Z-score: 1007.8 bits: 193.9 E(85289): 2.1e-49
Smith-Waterman score: 823; 53.8% identity (74.1% similar) in 247 aa overlap (1-246:1-244)
10 20 30 40 50
pF1KE0 MAAAAIPALLLCLPLL-FLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEK
::::: ::.: : .: .::: :: . : : ::: :..:.: : : .:: ::.:::.:
NP_078 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 TFLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPL
.:: ::::. : .. : ..: .: :: : .:::: . : .: : .::..::. ::
NP_078 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 TLQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVA
:::.::::: .:.:. ::::::.::. ::::::..: ::.:: :::.::::::.:. ..
NP_078 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 MSFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLIILP
:...:: :: .::.:::: . :::.: : .:. : .: .: :::: .::::
NP_078 TFFKMVSMRDCKSWLRDFLMHRKKRLEPTA--PPTMAPGLAQPKAIATTLSPWSFLIIL-
190 200 210 220 230
240
pF1KE0 CFILPGI
:::::::
NP_078 CFILPGI
240
246 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:47:37 2016 done: Wed Nov 2 22:47:38 2016
Total Scan time: 5.710 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]