FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0569, 194 aa
  1>>>pF1KE0569 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5377+/-0.000875; mu= 11.8482+/- 0.052
 mean_var=62.9954+/-12.443, 0's: 0 Z-trim(105.9): 9  B-trim: 0 in 0/50
 Lambda= 0.161592
 statistics sampled from 8686 (8691) to 8686 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.267), width:  16
 Scan time:  1.730

The best scores are:                                      opt bits E(32554)
CCDS41447.1 PDC gene_id:5132|Hs108|chr1            ( 194) 1271 304.7 2.3e-83
CCDS1370.1 PDC gene_id:5132|Hs108|chr1             ( 246) 1271 304.7 2.9e-83
CCDS6845.1 PDCL gene_id:5082|Hs108|chr9            ( 301)  646 159.0 2.5e-39


>>CCDS41447.1 PDC gene_id:5132|Hs108|chr1                 (194 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1610.0  bits: 304.7 E(32554): 2.3e-83
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KE0 MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 SNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREV
              130       140       150       160       170       180

              190    
pF1KE0 HVLEHTKIEEEDVE
       ::::::::::::::
CCDS41 HVLEHTKIEEEDVE
              190    

>>CCDS1370.1 PDC gene_id:5132|Hs108|chr1                  (246 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1608.3  bits: 304.7 E(32554): 2.9e-83
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:53-246)

                                             10        20        30
pF1KE0                               MSSPQSRNGKDSKERVSRKMSIQEYELIHK
                                     ::::::::::::::::::::::::::::::
CCDS13 KGVINDWRKFKLESQDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHK
             30        40        50        60        70        80  

               40        50        60        70        80        90
pF1KE0 EKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYE
             90       100       110       120       130       140  

              100       110       120       130       140       150
pF1KE0 DGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFI
            150       160       170       180       190       200  

              160       170       180       190    
pF1KE0 SVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE
            210       220       230       240      

>>CCDS6845.1 PDCL gene_id:5082|Hs108|chr9                 (301 aa)
 initn: 683 init1: 645 opt: 646  Z-score: 819.5  bits: 159.0 E(32554): 2.5e-39
Smith-Waterman score: 646; 49.2% identity (84.2% similar) in 183 aa overlap (5-187:104-286)

                                         10        20        30    
pF1KE0                           MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKED
                                     .... :: .:..: ::...:. .......:
CCDS68 TEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDD
            80        90       100       110       120       130   

           40        50        60        70        80        90    
pF1KE0 ENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIK
       :. :..::.: :..:.:.:  ::..  :.:. .:. ::. :.:: :  .:.:::::::: 
CCDS68 EEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIP
           140       150       160       170       180       190   

          100       110       120       130       140       150    
pF1KE0 GCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAE
       : .:.:. . ::::::: :::::.:.:  ::...:. ..::.::::::::::.::. :..
CCDS68 GTEAMNGCMICLAAEYPAVKFCKVKSSVIGASSQFTRNALPALLIYKGGELIGNFVRVTD
           200       210       220       230       240       250   

          160       170       180       190            
pF1KE0 QFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE        
       :....::: :.:.::.:.:::::.:: ::  ..               
CCDS68 QLGDDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID
           260       270       280       290       300 




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 22:52:11 2016 done: Wed Nov  2 22:52:11 2016
 Total Scan time:  1.730 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]