FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0566, 407 aa
  1>>>pF1KE0566 407 - 407 aa - 407 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5470+/-0.00033; mu= 17.0416+/- 0.021
 mean_var=79.8326+/-16.210, 0's: 0 Z-trim(116.9): 14  B-trim: 1435 in 1/52
 Lambda= 0.143544
 statistics sampled from 28429 (28439) to 28429 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.333), width:  16
 Scan time:  5.180

The best scores are:                                      opt bits E(85289)
NP_006484 (OMIM: 256731,608102) ceroid-lipofuscino ( 407) 2876 604.9 1.1e-172
XP_011533219 (OMIM: 256731,608102) PREDICTED: cero ( 246) 1714 364.1 2.1e-100


>>NP_006484 (OMIM: 256731,608102) ceroid-lipofuscinosis   (407 aa)
 initn: 2876 init1: 2876 opt: 2876  Z-score: 3221.0  bits: 604.9 E(85289): 1.1e-172
Smith-Waterman score: 2876; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KE0 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 IETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQI
              310       320       330       340       350       360

              370       380       390       400       
pF1KE0 FDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIRNKTLSGL
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIRNKTLSGL
              370       380       390       400       

>>XP_011533219 (OMIM: 256731,608102) PREDICTED: ceroid-l  (246 aa)
 initn: 1714 init1: 1714 opt: 1714  Z-score: 1923.6  bits: 364.1 E(85289): 2.1e-100
Smith-Waterman score: 1714; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KE0 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
XP_011 TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISDGE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKN
                                                                   
XP_011 TEAQRG                                                      
                                                                   




407 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:05:42 2016 done: Wed Nov  2 23:05:43 2016
 Total Scan time:  5.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]