FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0566, 407 aa
  1>>>pF1KE0566 407 - 407 aa - 407 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0334+/-0.00078; mu= 14.3945+/- 0.047
 mean_var=83.1635+/-16.686, 0's: 0 Z-trim(110.2): 10  B-trim: 130 in 1/50
 Lambda= 0.140640
 statistics sampled from 11433 (11436) to 11433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.351), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS9456.1 CLN5 gene_id:1203|Hs108|chr13           ( 407) 2876 592.9 1.7e-169


>>CCDS9456.1 CLN5 gene_id:1203|Hs108|chr13                (407 aa)
 initn: 2876 init1: 2876 opt: 2876  Z-score: 3156.3  bits: 592.9 E(32554): 1.7e-169
Smith-Waterman score: 2876; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KE0 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 IETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 IETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQI
              310       320       330       340       350       360

              370       380       390       400       
pF1KE0 FDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIRNKTLSGL
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 FDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIRNKTLSGL
              370       380       390       400       




407 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:05:42 2016 done: Wed Nov  2 23:05:42 2016
 Total Scan time:  1.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]