FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0552, 302 aa
  1>>>pF1KE0552 302 - 302 aa - 302 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4137+/-0.00076; mu= 15.6719+/- 0.046
 mean_var=71.0550+/-14.586, 0's: 0 Z-trim(109.5): 7  B-trim: 515 in 1/52
 Lambda= 0.152152
 statistics sampled from 10908 (10913) to 10908 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.335), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS46723.1 MPPED1 gene_id:758|Hs108|chr22         ( 326) 2126 475.4 2.6e-134
CCDS7870.1 MPPED2 gene_id:744|Hs108|chr11          ( 294) 1727 387.7 5.5e-108
CCDS44560.1 MPPED2 gene_id:744|Hs108|chr11         ( 277) 1519 342.1 2.9e-94


>>CCDS46723.1 MPPED1 gene_id:758|Hs108|chr22              (326 aa)
 initn: 2126 init1: 2126 opt: 2126  Z-score: 2524.9  bits: 475.4 E(32554): 2.6e-134
Smith-Waterman score: 2126; 100.0% identity (100.0% similar) in 302 aa overlap (1-302:25-326)

                                       10        20        30      
pF1KE0                         MAFSQSHVMAARRHQHSRLIIEVDEYSSNPTQAFTF
                               ::::::::::::::::::::::::::::::::::::
CCDS46 MWRSRWDASVLKAEALALLPCGLGMAFSQSHVMAARRHQHSRLIIEVDEYSSNPTQAFTF
               10        20        30        40        50        60

         40        50        60        70        80        90      
pF1KE0 YNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YNINQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFT
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KE0 ELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ELGLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPEN
              130       140       150       160       170       180

        160       170       180       190       200       210      
pF1KE0 YENVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YENVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVD
              190       200       210       220       230       240

        220       230       240       250       260       270      
pF1KE0 ILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYV
              250       260       270       280       290       300

        280       290       300  
pF1KE0 NASVCTVNYQPVNPPIVIDLPTPRNS
       ::::::::::::::::::::::::::
CCDS46 NASVCTVNYQPVNPPIVIDLPTPRNS
              310       320      

>>CCDS7870.1 MPPED2 gene_id:744|Hs108|chr11               (294 aa)
 initn: 1748 init1: 1727 opt: 1727  Z-score: 2052.2  bits: 387.7 E(32554): 5.5e-108
Smith-Waterman score: 1727; 79.3% identity (94.6% similar) in 294 aa overlap (9-302:1-294)

               10        20        30        40        50        60
pF1KE0 MAFSQSHVMAARRHQHSRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAP
               ::    ..... : ::::::::::::: :::::.:::::::.::::.:.:.:
CCDS78         MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTP
                       10        20        30        40        50  

               70        80        90       100       110       120
pF1KE0 KPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKI
       :: :.:::::.:::::::: :::::::.:.:.::::::::::::::::.:::.:::::::
CCDS78 KPAGHTRFVCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKI
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KE0 VIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQSLLTNCIYLQDSEVTVRGF
       :::::::::::.::::::.:::.: ::::::::::...:::::::: ::::::::::.::
CCDS78 VIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGF
            120       130       140       150       160       170  

              190       200       210       220       230       240
pF1KE0 RIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGC
       ::::.:: ::: ::::::::::.::.::::::::.:::.:::::::: :::::..:::::
CCDS78 RIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGC
            180       190       200       210       220       230  

              250       260       270       280       290       300
pF1KE0 VELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPR
       :::::::::::.:.::::: ::::::.:.:: :::.:::.:::..::.::::..:::.:.
CCDS78 VELLNTVQRRVRPKLHVFGGIHEGYGIMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQ
            240       250       260       270       280       290  

         
pF1KE0 NS
       .:
CCDS78 GS
         

>>CCDS44560.1 MPPED2 gene_id:744|Hs108|chr11              (277 aa)
 initn: 1519 init1: 1519 opt: 1519  Z-score: 1805.8  bits: 342.1 E(32554): 2.9e-94
Smith-Waterman score: 1519; 81.2% identity (94.1% similar) in 255 aa overlap (9-263:1-255)

               10        20        30        40        50        60
pF1KE0 MAFSQSHVMAARRHQHSRLIIEVDEYSSNPTQAFTFYNINQGRFQPPHVQMVDPVPHDAP
               ::    ..... : ::::::::::::: :::::.:::::::.::::.:.:.:
CCDS44         MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTP
                       10        20        30        40        50  

               70        80        90       100       110       120
pF1KE0 KPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTELGLPSEVKKFNEWLGSLPYEYKI
       :: :.:::::.:::::::: :::::::.:.:.::::::::::::::::.:::.:::::::
CCDS44 KPAGHTRFVCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKI
             60        70        80        90       100       110  

              130       140       150       160       170       180
pF1KE0 VIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYENVQSLLTNCIYLQDSEVTVRGF
       :::::::::::.::::::.:::.: ::::::::::...:::::::: ::::::::::.::
CCDS44 VIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGF
            120       130       140       150       160       170  

              190       200       210       220       230       240
pF1KE0 RIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDILITHGPPLGFLDWVPKKMQRVGC
       ::::.:: ::: ::::::::::.::.::::::::.:::.:::::::: :::::..:::::
CCDS44 RIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGC
            180       190       200       210       220       230  

              250       260       270       280       290       300
pF1KE0 VELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNASVCTVNYQPVNPPIVIDLPTPR
       :::::::::::.:.::::: :::                                     
CCDS44 VELLNTVQRRVRPKLHVFGGIHEVNPVSISKALRTKICSLPSKTS               
            240       250       260       270                      




302 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:46:35 2016 done: Wed Nov  2 23:46:35 2016
 Total Scan time:  2.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]