FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0537, 262 aa
  1>>>pF1KE0537 262 - 262 aa - 262 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4531+/-0.000804; mu= 13.5690+/- 0.048
 mean_var=57.8255+/-11.542, 0's: 0 Z-trim(106.1): 10  B-trim: 15 in 1/49
 Lambda= 0.168661
 statistics sampled from 8807 (8809) to 8807 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.271), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS14020.1 PMM1 gene_id:5372|Hs108|chr22          ( 262) 1753 434.6 3.2e-122
CCDS10536.1 PMM2 gene_id:5373|Hs108|chr16          ( 246) 1144 286.5 1.2e-77


>>CCDS14020.1 PMM1 gene_id:5372|Hs108|chr22               (262 aa)
 initn: 1753 init1: 1753 opt: 1753  Z-score: 2307.7  bits: 434.6 E(32554): 3.2e-122
Smith-Waterman score: 1753; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)

               10        20        30        40        50        60
pF1KE0 MAVTAQAARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAVTAQAARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EQLGDGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EQLGDGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSV
              190       200       210       220       230       240

              250       260  
pF1KE0 VSPQDTVQRCREIFFPETAHEA
       ::::::::::::::::::::::
CCDS14 VSPQDTVQRCREIFFPETAHEA
              250       260  

>>CCDS10536.1 PMM2 gene_id:5373|Hs108|chr16               (246 aa)
 initn: 938 init1: 918 opt: 1144  Z-score: 1507.3  bits: 286.5 E(32554): 1.2e-77
Smith-Waterman score: 1144; 68.3% identity (86.7% similar) in 240 aa overlap (15-254:8-245)

               10        20        30        40        50        60
pF1KE0 MAVTAQAARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKIA
                     :::::::::::  ::::  :.  ::::::....::::::::. :. 
CCDS10        MAAPGPALCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQ
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KE0 EQLGDGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLR
       ::::  ..:.::.:::: ::: : :: :.:: .:.::.:::: :.:::::.::::.: ..
CCDS10 EQLG--NDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIK
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KE0 LPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLR
       :::::::::::::::::.:::::::. :::::: ::::::.::.:::  :. ::::::: 
CCDS10 LPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLT
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KE0 FSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSV
       :: ::.:::::::.::::::::  ...:.. ::.:::..: ::::: :::.::::.:.::
CCDS10 FSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSV
             180       190       200       210       220       230 

              250       260  
pF1KE0 VSPQDTVQRCREIFFPETAHEA
       ..:.:: . :. .:        
CCDS10 TAPEDTRRICELLFS       
             240             




262 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:33:39 2016 done: Thu Nov  3 00:33:40 2016
 Total Scan time:  1.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]