FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0535, 409 aa
  1>>>pF1KE0535 409 - 409 aa - 409 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2630+/-0.000795; mu= 17.1350+/- 0.048
 mean_var=63.0144+/-12.790, 0's: 0 Z-trim(107.0): 6  B-trim: 0 in 0/52
 Lambda= 0.161568
 statistics sampled from 9316 (9319) to 9316 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.286), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS13899.1 PISD gene_id:23761|Hs108|chr22         ( 375) 2107 499.7 1.8e-141


>>CCDS13899.1 PISD gene_id:23761|Hs108|chr22              (375 aa)
 initn: 2107 init1: 2107 opt: 2107  Z-score: 2653.1  bits: 499.7 E(32554): 1.8e-141
Smith-Waterman score: 2107; 100.0% identity (100.0% similar) in 302 aa overlap (108-409:74-375)

        80        90       100       110       120       130       
pF1KE0 AGYRQYEKYRERELEKLGLEIPPKLAGHWEVALYKSVPTRLLSRAWGRLNQVELPHWLRR
                                     ::::::::::::::::::::::::::::::
CCDS13 RSWPLTVLYYLLPFGALRPLSRVGWRPVSRVALYKSVPTRLLSRAWGRLNQVELPHWLRR
            50        60        70        80        90       100   

       140       150       160       170       180       190       
pF1KE0 PVYSLYIWTFGVNMKEAAVEDLHHYRNLSEFFRRKLKPQARPVCGLHSVISPSDGRILNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PVYSLYIWTFGVNMKEAAVEDLHHYRNLSEFFRRKLKPQARPVCGLHSVISPSDGRILNF
           110       120       130       140       150       160   

       200       210       220       230       240       250       
pF1KE0 GQVKNCEVEQVKGVTYSLESFLGPRMCTEDLPFPPAASCDSFKNQLVTREGNELYHCVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQVKNCEVEQVKGVTYSLESFLGPRMCTEDLPFPPAASCDSFKNQLVTREGNELYHCVIY
           170       180       190       200       210       220   

       260       270       280       290       300       310       
pF1KE0 LAPGDYHCFHSPTDWTVSHRRHFPGSLMSVNPGMARWIKELFCHNERVVLTGDWKHGFFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LAPGDYHCFHSPTDWTVSHRRHFPGSLMSVNPGMARWIKELFCHNERVVLTGDWKHGFFS
           230       240       250       260       270       280   

       320       330       340       350       360       370       
pF1KE0 LTAVGATNVGSIRIYFDRDLHTNSPRHSKGSYNDFSFVTHTNREGVPMRKGEHLGEFNLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LTAVGATNVGSIRIYFDRDLHTNSPRHSKGSYNDFSFVTHTNREGVPMRKGEHLGEFNLG
           290       300       310       320       330       340   

       380       390       400         
pF1KE0 STIVLIFEAPKDFNFQLKTGQKIRFGEALGSL
       ::::::::::::::::::::::::::::::::
CCDS13 STIVLIFEAPKDFNFQLKTGQKIRFGEALGSL
           350       360       370     




409 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:47:45 2016 done: Thu Nov  3 00:47:46 2016
 Total Scan time:  2.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]