FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0531, 411 aa
  1>>>pF1KE0531 411 - 411 aa - 411 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1468+/-0.000838; mu= 17.3406+/- 0.050
 mean_var=58.7789+/-11.703, 0's: 0 Z-trim(105.7): 22  B-trim: 52 in 1/50
 Lambda= 0.167287
 statistics sampled from 8586 (8592) to 8586 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS14030.1 NAGA gene_id:4668|Hs108|chr22          ( 411) 2872 701.6 3.4e-202
CCDS14484.1 GLA gene_id:2717|Hs108|chrX            ( 429) 1282 317.9 1.2e-86


>>CCDS14030.1 NAGA gene_id:4668|Hs108|chr22               (411 aa)
 initn: 2872 init1: 2872 opt: 2872  Z-score: 3743.4  bits: 701.6 E(32554): 3.4e-202
Smith-Waterman score: 2872; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KE0 MLLKTVLLLGHVAQVLMLDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MLLKTVLLLGHVAQVLMLDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RMAQDGWRDMGYTYLNIDDCWIGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RMAQDGWRDMGYTYLNIDDCWIGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RPIAFSCSWPAYEGGLPPRVNYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RPIAFSCSWPAYEGGLPPRVNYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRTDMPYRYHSSLGQLNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRTDMPYRYHSSLGQLNF
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KE0 TGSVIYEAQDVYSGDIISGLRDETNFTVIINPSGVVMWYLYPIKNLEMSQQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TGSVIYEAQDVYSGDIISGLRDETNFTVIINPSGVVMWYLYPIKNLEMSQQ
              370       380       390       400       410 

>>CCDS14484.1 GLA gene_id:2717|Hs108|chrX                 (429 aa)
 initn: 1102 init1: 774 opt: 1282  Z-score: 1669.2  bits: 317.9 E(32554): 1.2e-86
Smith-Waterman score: 1282; 49.9% identity (72.9% similar) in 399 aa overlap (18-409:32-424)

                            10        20        30        40       
pF1KE0              MLLKTVLLLGHVAQVLMLDNGLLQTPPMGWLAWERFRCNINCDEDPK
                                     ::::: .:: :::: :::: ::..:.:.: 
CCDS14 QLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEPD
              10        20        30        40        50        60 

        50        60        70        80         90       100      
pF1KE0 NCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIGG-RDASGRLMPDPKRFPHGIPFLA
       .::::.::::::. :...::.: :: :: :::::..  ::. :::. ::.::::::  ::
CCDS14 SCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQLA
              70        80        90       100       110       120 

        110       120       130       140       150        160     
pF1KE0 DYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCF-STPEER
       .:::: :::::::::.:: :: :.::. .     ::::::.: ::.::.:::. .. :. 
CCDS14 NYVHSKGLKLGIYADVGNKTCAGFPGS-FGYYDIDAQTFADWGVDLLKFDGCYCDSLENL
             130       140        150       160       170       180

         170       180       190       200       210       220     
pF1KE0 AQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRVNYSLLADICNLWRNYDDIQDSWWSV
       :.:: .:. ::: ::: :..:: :: :   .  . ::. . . :: :::. ::.::: :.
CCDS14 ADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQ-KPNYTEIRQYCNHWRNFADIDDSWKSI
              190       200       210        220       230         

         230       240       250       260       270       280     
pF1KE0 LSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTD
        :::.:   .:. .  ::::: :::::::.::::::: .:. .:::::...::::.::.:
CCDS14 KSILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSND
     240       250       260       270       280       290         

         290       300       310       320       330       340     
pF1KE0 LRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRT
       :: :: :   .::.  .: ::::::: :: ....  .. ::. ::::. : :..... : 
CCDS14 LRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNF-EVWERPLSGLAWAVAMIN-RQ
     300       310       320       330        340       350        

           350          360       370       380       390       400
pF1KE0 DM--PYRYH---SSLGQLNFTGSVIYEAQDVYSGDIISGLRDETNFTVIINPSGVVMWYL
       ..  :  :    .:::.    . . . .: .     ..  .  . .   :::.:.:.  :
CCDS14 EIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQL
       360       370       380       390       400       410       

              410    
pF1KE0 YPIKNLEMSQQ   
          ....::     
CCDS14 E--NTMQMSLKDLL
         420         




411 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:26:00 2016 done: Thu Nov  3 01:26:01 2016
 Total Scan time:  2.810 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]