FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0530, 154 aa
  1>>>pF1KE0530 154 - 154 aa - 154 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1012+/-0.000729; mu= 13.1675+/- 0.044
 mean_var=64.3341+/-12.717, 0's: 0 Z-trim(108.9): 13  B-trim: 202 in 1/50
 Lambda= 0.159902
 statistics sampled from 10512 (10525) to 10512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.323), width:  16
 Scan time:  1.430

The best scores are:                                      opt bits E(32554)
CCDS13917.1 MB gene_id:4151|Hs108|chr22            ( 154) 1030 245.6 8.8e-66
CCDS11746.1 CYGB gene_id:114757|Hs108|chr17        ( 190)  253 66.5 9.4e-12


>>CCDS13917.1 MB gene_id:4151|Hs108|chr22                 (154 aa)
 initn: 1030 init1: 1030 opt: 1030  Z-score: 1294.5  bits: 245.6 E(32554): 8.8e-66
Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)

               10        20        30        40        50        60
pF1KE0 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
               70        80        90       100       110       120

              130       140       150    
pF1KE0 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
       ::::::::::::::::::::::::::::::::::
CCDS13 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
              130       140       150    

>>CCDS11746.1 CYGB gene_id:114757|Hs108|chr17             (190 aa)
 initn: 238 init1: 126 opt: 253  Z-score: 324.4  bits: 66.5 E(32554): 9.4e-12
Smith-Waterman score: 253; 28.6% identity (64.3% similar) in 154 aa overlap (3-152:19-171)

                               10        20        30        40    
pF1KE0                 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKF
                         ::..: . :  .:... :.    :  .:.:.: . : . . :
CCDS11 MEKVPGEMEIERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYF
               10        20        30        40        50        60

           50        60        70        80        90           100
pF1KE0 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPL----AQSHATKHKI
       ..:::...  ::. : .:.::.  :. ::. ....  :   ... .    ...:: :::.
CCDS11 SQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENL-HDPDKVSSVLALVGKAHALKHKV
               70        80        90        100       110         

              110       120       130       140       150          
pF1KE0 PVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG      
          :....:  :..:.  .  .::  ..: :  :   :. . ... :::.:.        
CCDS11 EPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNAT
     120       130       140       150       160       170         

CCDS11 TPPATLPSSGP
     180       190




154 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:30:19 2016 done: Thu Nov  3 01:30:19 2016
 Total Scan time:  1.430 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]