FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0527, 244 aa
  1>>>pF1KE0527 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2534+/-0.000797; mu= 14.4688+/- 0.048
 mean_var=63.4988+/-13.326, 0's: 0 Z-trim(107.5): 28  B-trim: 291 in 1/50
 Lambda= 0.160950
 statistics sampled from 9617 (9625) to 9617 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.296), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS33617.1 GSTT2B gene_id:653689|Hs108|chr22      ( 244) 1627 386.2 1.1e-107


>>CCDS33617.1 GSTT2B gene_id:653689|Hs108|chr22           (244 aa)
 initn: 1627 init1: 1627 opt: 1627  Z-score: 2046.9  bits: 386.2 E(32554): 1.1e-107
Smith-Waterman score: 1627; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE0 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 YELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRI
              190       200       210       220       230       240

           
pF1KE0 ARIP
       ::::
CCDS33 ARIP
           




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:41:13 2016 done: Thu Nov  3 01:41:13 2016
 Total Scan time:  1.940 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]