FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0525, 384 aa
  1>>>pF1KE0525 384 - 384 aa - 384 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2756+/-0.000864; mu= 16.5540+/- 0.052
 mean_var=61.0948+/-12.505, 0's: 0 Z-trim(105.2): 28  B-trim: 0 in 0/51
 Lambda= 0.164086
 statistics sampled from 8268 (8274) to 8268 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.254), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS13827.1 UPB1 gene_id:51733|Hs108|chr22         ( 384) 2606 625.5 2.4e-179


>>CCDS13827.1 UPB1 gene_id:51733|Hs108|chr22              (384 aa)
 initn: 2606 init1: 2606 opt: 2606  Z-score: 3333.4  bits: 625.5 E(32554): 2.4e-179
Smith-Waterman score: 2606; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KE0 MAGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAGAEWKSLEECLEKHLPLPDLQEVKRVLYGKELRKLDLPREAFEAASREDFELQGYAFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AAEEQLRRPRIVHVGLVQNRIPLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AAEEQLRRPRIVHVGLVQNRIPLPANAPVAEQVSALHRRIKAIVEVAAMCGVNIICFQEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVVVSPILERDSEHGDVLWNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVVVSPILERDSEHGDVLWNT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 AVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPVFQTQFGRIAVNICYGRHHPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 NWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGTEHFPNEFTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NWLMYSINGAEIIFNPSATIGALSESLWPIEARNAAIANHCFTCAINRVGTEHFPNEFTS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 GDGKKAHQDFGYFYGSSYVAAPDSSRTPGLSRSRDGLLVAKLDLNLCQQVNDVWNFKMTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GDGKKAHQDFGYFYGSSYVAAPDSSRTPGLSRSRDGLLVAKLDLNLCQQVNDVWNFKMTG
              310       320       330       340       350       360

              370       380    
pF1KE0 RYEMYARELAEAVKSNYSPTIVKE
       ::::::::::::::::::::::::
CCDS13 RYEMYARELAEAVKSNYSPTIVKE
              370       380    




384 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:56:43 2016 done: Thu Nov  3 01:56:44 2016
 Total Scan time:  2.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]