FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0520, 350 aa
  1>>>pF1KE0520 350 - 350 aa - 350 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2985+/-0.000658; mu= 18.4950+/- 0.040
 mean_var=89.0052+/-17.847, 0's: 0 Z-trim(112.9): 15  B-trim: 0 in 0/53
 Lambda= 0.135946
 statistics sampled from 13581 (13595) to 13581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.418), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS13882.1 SLC35E4 gene_id:339665|Hs108|chr22     ( 350) 2335 467.2 8.9e-132
CCDS82708.1 SLC35E4 gene_id:339665|Hs108|chr22     ( 234) 1426 288.8 3.1e-78


>>CCDS13882.1 SLC35E4 gene_id:339665|Hs108|chr22          (350 aa)
 initn: 2335 init1: 2335 opt: 2335  Z-score: 2479.3  bits: 467.2 E(32554): 8.9e-132
Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KE0 MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ASMSSLNKWIFTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ASMSSLNKWIFTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 AGVAPPPTAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGVAPPPTAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSR
              250       260       270       280       290       300

              310       320       330       340       350
pF1KE0 LLFGSRLSALSYVGIALTLSGMFLYHNCEFVASWAARRGLWRRDQPSKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLFGSRLSALSYVGIALTLSGMFLYHNCEFVASWAARRGLWRRDQPSKGL
              310       320       330       340       350

>>CCDS82708.1 SLC35E4 gene_id:339665|Hs108|chr22          (234 aa)
 initn: 1422 init1: 1422 opt: 1426  Z-score: 1518.1  bits: 288.8 E(32554): 3.1e-78
Smith-Waterman score: 1426; 96.3% identity (98.1% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KE0 MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ASMSSLNKWIFTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ASMSSLNKWIFTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLE
       :::::::::::::::::::::::::::  .:  ...                        
CCDS82 EFRTPPTGCGFLLAATCLRGLKSVQQSLSFQICKMELMIPMERVRMRSAGQGQE      
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KE0 AGVAPPPTAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSR




350 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:07:08 2016 done: Thu Nov  3 02:07:08 2016
 Total Scan time:  2.780 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]