FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0515, 217 aa
  1>>>pF1KE0515 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0592+/-0.00074; mu= 7.2449+/- 0.045
 mean_var=119.8329+/-23.720, 0's: 0 Z-trim(112.9): 8  B-trim: 53 in 1/50
 Lambda= 0.117162
 statistics sampled from 13591 (13594) to 13591 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.418), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS13962.1 C22orf23 gene_id:84645|Hs108|chr22     ( 217) 1425 250.8 4.7e-67
CCDS74860.1 C22orf23 gene_id:84645|Hs108|chr22     ( 196) 1068 190.5 6.4e-49


>>CCDS13962.1 C22orf23 gene_id:84645|Hs108|chr22          (217 aa)
 initn: 1425 init1: 1425 opt: 1425  Z-score: 1317.2  bits: 250.8 E(32554): 4.7e-67
Smith-Waterman score: 1425; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KE0 MASQKQMEVVTKGTGFRRRPKTITYTPGTCELLRVMMKESKLTNIQQRHIMDIMKRGDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASQKQMEVVTKGTGFRRRPKTITYTPGTCELLRVMMKESKLTNIQQRHIMDIMKRGDAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ
              130       140       150       160       170       180

              190       200       210       
pF1KE0 GKQYRGIILAEISQKLREMEDIDHRRSEELRKGLATT
       :::::::::::::::::::::::::::::::::::::
CCDS13 GKQYRGIILAEISQKLREMEDIDHRRSEELRKGLATT
              190       200       210       

>>CCDS74860.1 C22orf23 gene_id:84645|Hs108|chr22          (196 aa)
 initn: 1068 init1: 1068 opt: 1068  Z-score: 991.8  bits: 190.5 E(32554): 6.4e-49
Smith-Waterman score: 1230; 89.9% identity (89.9% similar) in 217 aa overlap (1-217:1-196)

               10        20        30        40        50        60
pF1KE0 MASQKQMEVVTKGTGFRRRPKTITYTPGTCELLRVMMKESKLTNIQQRHIMDIMKRGDAL
       ::::::::::::::::::::::::::::::::::                      ::::
CCDS74 MASQKQMEVVTKGTGFRRRPKTITYTPGTCELLR---------------------GGDAL
               10        20        30                              

               70        80        90       100       110       120
pF1KE0 PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PLQCSPTSSQRVLPSKQIASPIYLPPILAARPHLRPANMCQANGAYSREQFKPQATRDLE
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KE0 KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KEKQRLQNIFATGKDMEERKRKAPPARQKAPAPELDRFEELVKEIQERKEFLADMEALGQ
     100       110       120       130       140       150         

              190       200       210       
pF1KE0 GKQYRGIILAEISQKLREMEDIDHRRSEELRKGLATT
       :::::::::::::::::::::::::::::::::::::
CCDS74 GKQYRGIILAEISQKLREMEDIDHRRSEELRKGLATT
     160       170       180       190      




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:44:51 2016 done: Thu Nov  3 02:44:52 2016
 Total Scan time:  2.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]