FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0514, 229 aa
  1>>>pF1KE0514 229 - 229 aa - 229 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1021+/-0.0007; mu= 10.7071+/- 0.042
 mean_var=76.9791+/-15.336, 0's: 0 Z-trim(110.8): 5  B-trim: 680 in 1/52
 Lambda= 0.146180
 statistics sampled from 11862 (11864) to 11862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.364), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS33654.1 CCDC134 gene_id:79879|Hs108|chr22      ( 229) 1509 327.0 6.4e-90
CCDS77680.1 CCDC134 gene_id:79879|Hs108|chr22      ( 116)  470 107.7 3.2e-24


>>CCDS33654.1 CCDC134 gene_id:79879|Hs108|chr22           (229 aa)
 initn: 1509 init1: 1509 opt: 1509  Z-score: 1727.8  bits: 327.0 E(32554): 6.4e-90
Smith-Waterman score: 1509; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KE0 MDLLQFLAFLFVLLLSGMGATGTLRTSLDPSLEIYKKMFEVKRREQLLALKNLAQLNDIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MDLLQFLAFLFVLLLSGMGATGTLRTSLDPSLEIYKKMFEVKRREQLLALKNLAQLNDIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QQYKILDVMLKGLFKVLEDSRTVLTAADVLPDGPFPQDEKLKDAFSHVVENTAFFGDVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QQYKILDVMLKGLFKVLEDSRTVLTAADVLPDGPFPQDEKLKDAFSHVVENTAFFGDVVL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RFPRIVHYYFDHNSNWNLLIRWGISFCNQTGVFNQGPHSPILSLMAQELGISEKDSNFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RFPRIVHYYFDHNSNWNLLIRWGISFCNQTGVFNQGPHSPILSLMAQELGISEKDSNFQN
              130       140       150       160       170       180

              190       200       210       220         
pF1KE0 PFKIDRTEFIPSTDPFQKALREEEKRRKKEEKRKEIRKGPRISRSQSEL
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PFKIDRTEFIPSTDPFQKALREEEKRRKKEEKRKEIRKGPRISRSQSEL
              190       200       210       220         

>>CCDS77680.1 CCDC134 gene_id:79879|Hs108|chr22           (116 aa)
 initn: 485 init1: 470 opt: 470  Z-score: 548.3  bits: 107.7 E(32554): 3.2e-24
Smith-Waterman score: 496; 50.7% identity (50.7% similar) in 229 aa overlap (1-229:1-116)

               10        20        30        40        50        60
pF1KE0 MDLLQFLAFLFVLLLSGMGATGTLRTSLDPSLEIYKKMFEVKRREQLLALKNLAQLNDIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MDLLQFLAFLFVLLLSGMGATGTLRTSLDPSLEIYKKMFEVKRREQLLALKNLAQLNDIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QQYKILDVMLKGLFKVLEDSRTVLTAADVLPDGPFPQDEKLKDAFSHVVENTAFFGDVVL
       :::::::::::::::                                             
CCDS77 QQYKILDVMLKGLFK---------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KE0 RFPRIVHYYFDHNSNWNLLIRWGISFCNQTGVFNQGPHSPILSLMAQELGISEKDSNFQN
                                                                   
CCDS77 ------------------------------------------------------------
                                                                   

              190       200       210       220         
pF1KE0 PFKIDRTEFIPSTDPFQKALREEEKRRKKEEKRKEIRKGPRISRSQSEL
               :::::::::::::::::::::::::::::::::::::::::
CCDS77 --------FIPSTDPFQKALREEEKRRKKEEKRKEIRKGPRISRSQSEL
                  80        90       100       110      




229 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 02:49:51 2016 done: Thu Nov  3 02:49:51 2016
 Total Scan time:  2.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]