FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0510, 235 aa
  1>>>pF1KE0510 235 - 235 aa - 235 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6761+/-0.000687; mu= 14.4324+/- 0.042
 mean_var=92.2526+/-18.950, 0's: 0 Z-trim(112.2): 4  B-trim: 0 in 0/52
 Lambda= 0.133532
 statistics sampled from 12967 (12970) to 12967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.398), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS13845.1 HSCB gene_id:150274|Hs108|chr22        ( 235) 1620 321.2 3.5e-88
CCDS82704.1 HSCB gene_id:150274|Hs108|chr22        ( 143) 1041 209.5 9.2e-55


>>CCDS13845.1 HSCB gene_id:150274|Hs108|chr22             (235 aa)
 initn: 1620 init1: 1620 opt: 1620  Z-score: 1696.5  bits: 321.2 E(32554): 3.5e-88
Smith-Waterman score: 1620; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE0 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE0 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIKLKKIPL
              190       200       210       220       230     

>>CCDS82704.1 HSCB gene_id:150274|Hs108|chr22             (143 aa)
 initn: 1041 init1: 1041 opt: 1041  Z-score: 1096.7  bits: 209.5 E(32554): 9.2e-55
Smith-Waterman score: 1041; 99.3% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE0 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MWRGRAGALLRVWGFWPTGVPRRRPLSCDAASQAGSNYPRCWNCGGPWGPGREDRFFCPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 STLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESEAA
       :::::::::::::::::::::.                                      
CCDS82 STLVNDAYKTLLAPLSRGLYLVS                                     
              130       140                                        




235 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:09:15 2016 done: Thu Nov  3 03:09:15 2016
 Total Scan time:  1.960 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]