FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0509, 170 aa
  1>>>pF1KE0509 170 - 170 aa - 170 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9648+/-0.000705; mu= 10.0913+/- 0.043
 mean_var=79.7445+/-16.172, 0's: 0 Z-trim(110.9): 6  B-trim: 0 in 0/51
 Lambda= 0.143623
 statistics sampled from 11957 (11962) to 11957 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.367), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS63436.1 CCDC117 gene_id:150275|Hs108|chr22     ( 261) 1050 226.3 1.1e-59
CCDS13846.1 CCDC117 gene_id:150275|Hs108|chr22     ( 279) 1050 226.3 1.1e-59
CCDS63435.1 CCDC117 gene_id:150275|Hs108|chr22     ( 204)  823 179.2 1.3e-45


>>CCDS63436.1 CCDC117 gene_id:150275|Hs108|chr22          (261 aa)
 initn: 1050 init1: 1050 opt: 1050  Z-score: 1185.2  bits: 226.3 E(32554): 1.1e-59
Smith-Waterman score: 1050; 100.0% identity (100.0% similar) in 162 aa overlap (9-170:100-261)

                                     10        20        30        
pF1KE0                       MAALGRPFSGLSIPGILDVICEEMDQTTGEPQCEVARR
                                     ::::::::::::::::::::::::::::::
CCDS63 ITEAELCAGPNDWILCAHQDVEGHGVNPSVSGLSIPGILDVICEEMDQTTGEPQCEVARR
      70        80        90       100       110       120         

       40        50        60        70        80        90        
pF1KE0 KLQEIEDRIIDEDEEVEADRNVNHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KLQEIEDRIIDEDEEVEADRNVNHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSME
     130       140       150       160       170       180         

      100       110       120       130       140       150        
pF1KE0 LVLWKPLPELLSDKPKPSSNTKNYTGESQAKHVAAGTAFPQRTELFSEPRPTGMSLYNSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LVLWKPLPELLSDKPKPSSNTKNYTGESQAKHVAAGTAFPQRTELFSEPRPTGMSLYNSL
     190       200       210       220       230       240         

      160       170
pF1KE0 ETATSTEEEMEL
       ::::::::::::
CCDS63 ETATSTEEEMEL
     250       260 

>>CCDS13846.1 CCDC117 gene_id:150275|Hs108|chr22          (279 aa)
 initn: 1050 init1: 1050 opt: 1050  Z-score: 1184.7  bits: 226.3 E(32554): 1.1e-59
Smith-Waterman score: 1050; 100.0% identity (100.0% similar) in 162 aa overlap (9-170:118-279)

                                     10        20        30        
pF1KE0                       MAALGRPFSGLSIPGILDVICEEMDQTTGEPQCEVARR
                                     ::::::::::::::::::::::::::::::
CCDS13 ITEAELCAGPNDWILCAHQDVEGHGVNPSVSGLSIPGILDVICEEMDQTTGEPQCEVARR
        90       100       110       120       130       140       

       40        50        60        70        80        90        
pF1KE0 KLQEIEDRIIDEDEEVEADRNVNHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLQEIEDRIIDEDEEVEADRNVNHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSME
       150       160       170       180       190       200       

      100       110       120       130       140       150        
pF1KE0 LVLWKPLPELLSDKPKPSSNTKNYTGESQAKHVAAGTAFPQRTELFSEPRPTGMSLYNSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVLWKPLPELLSDKPKPSSNTKNYTGESQAKHVAAGTAFPQRTELFSEPRPTGMSLYNSL
       210       220       230       240       250       260       

      160       170
pF1KE0 ETATSTEEEMEL
       ::::::::::::
CCDS13 ETATSTEEEMEL
       270         

>>CCDS63435.1 CCDC117 gene_id:150275|Hs108|chr22          (204 aa)
 initn: 892 init1: 823 opt: 823  Z-score: 932.6  bits: 179.2 E(32554): 1.3e-45
Smith-Waterman score: 823; 91.4% identity (97.1% similar) in 139 aa overlap (32-170:66-204)

              10        20        30        40        50        60 
pF1KE0 AALGRPFSGLSIPGILDVICEEMDQTTGEPQCEVARRKLQEIEDRIIDEDEEVEADRNVN
                                     .:.  ... .: .:.:::::::::::::::
CCDS63 ADGAELAPRPGPRAVPSSPAGSAARGRVSVHCKKKHKREEEEDDEIIDEDEEVEADRNVN
          40        50        60        70        80        90     

              70        80        90       100       110       120 
pF1KE0 HLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVLWKPLPELLSDKPKPSSNTKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 HLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVLWKPLPELLSDKPKPSSNTKN
         100       110       120       130       140       150     

             130       140       150       160       170
pF1KE0 YTGESQAKHVAAGTAFPQRTELFSEPRPTGMSLYNSLETATSTEEEMEL
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YTGESQAKHVAAGTAFPQRTELFSEPRPTGMSLYNSLETATSTEEEMEL
         160       170       180       190       200    




170 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:14:56 2016 done: Thu Nov  3 03:14:56 2016
 Total Scan time:  1.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]