FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0506, 329 aa
  1>>>pF1KE0506 329 - 329 aa - 329 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6233+/-0.000364; mu= 14.6726+/- 0.023
 mean_var=71.7673+/-15.028, 0's: 0 Z-trim(115.3): 9  B-trim: 1496 in 2/52
 Lambda= 0.151395
 statistics sampled from 25729 (25738) to 25729 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.302), width:  16
 Scan time:  8.170

The best scores are:                                      opt bits E(85289)
NP_001032755 (OMIM: 617034) GATS-like protein 3 [H ( 329) 2150 478.6  8e-135
NP_001138536 (OMIM: 617033) GATS-like protein 2 [H ( 329) 1346 303.0 5.9e-82
XP_016868063 (OMIM: 617033) PREDICTED: GATS-like p ( 290) 1117 252.9   6e-67


>>NP_001032755 (OMIM: 617034) GATS-like protein 3 [Homo   (329 aa)
 initn: 2150 init1: 2150 opt: 2150  Z-score: 2541.5  bits: 478.6 E(85289): 8e-135
Smith-Waterman score: 2150; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KE0 MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KELPPSEFLQVAEATWLVLNVSSHSGAAVQAAGVTKIARSVIAPLAEHHVSVLMLSTYQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELPPSEFLQVAEATWLVLNVSSHSGAAVQAAGVTKIARSVIAPLAEHHVSVLMLSTYQT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DFILVREQDLSVVIHTLAQEFDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTVHPIQSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFILVREQDLSVVIHTLAQEFDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTVHPIQSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QNRFCVLTLDPETLPAIATTLIDVLFYSHSTPKEAASSSPEPSSITFFAFSLIEGYISIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNRFCVLTLDPETLPAIATTLIDVLFYSHSTPKEAASSSPEPSSITFFAFSLIEGYISIV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MDAETQKKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGIVAQIAGPLAAADISAYYIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDAETQKKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGIVAQIAGPLAAADISAYYIST
              250       260       270       280       290       300

              310       320         
pF1KE0 FNFDHALVPEDGIGSVIEVLQRRQEGLAS
       :::::::::::::::::::::::::::::
NP_001 FNFDHALVPEDGIGSVIEVLQRRQEGLAS
              310       320         

>>NP_001138536 (OMIM: 617033) GATS-like protein 2 [Homo   (329 aa)
 initn: 973 init1: 509 opt: 1346  Z-score: 1592.4  bits: 303.0 E(85289): 5.9e-82
Smith-Waterman score: 1346; 63.8% identity (84.7% similar) in 326 aa overlap (1-324:1-325)

               10        20        30        40        50        60
pF1KE0 MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGF
       :::::::::..: :::. .. :.:. :::: ::  ..:::::::::::::::..::::::
NP_001 MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGF
               10        20        30        40        50        60

               70        80          90       100       110        
pF1KE0 KELPPSEFLQVAEATWLVLNVSSHSGA--AVQAAGVTKIARSVIAPLAEHHVSVLMLSTY
        ::: :: :.::.::::.::: : .:.  . :  ::::::.:::::::....::.:::::
NP_001 LELPSSEHLSVADATWLALNVVSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTY
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE0 QTDFILVREQDLSVVIHTLAQEFDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTVHPIQ
       :::::::::.::  : :::..:: : : :.:: : .     .::: . .    :..::..
NP_001 QTDFILVRERDLPFVTHTLSSEFTILRVVNGETVAAENLGITNGFVKPKLVQRPVIHPLS
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE0 SPQNRFCVLTLDPETLPAIATTLIDVLFYSHSTPKEAASSSPEPSSITFFAFSLIEGYIS
       ::.::::: .:::.::::.:: :.::.:::... :.  ... . . : ::.:::::::::
NP_001 SPSNRFCVTSLDPDTLPAVATLLMDVMFYSNGV-KDPMATGDDCGHIRFFSFSLIEGYIS
              190       200       210        220       230         

      240       250       260       270       280       290        
pF1KE0 IVMDAETQKKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGIVAQIAGPLAAADISAYYI
       .:::..::..:::.::.::.:::::.::::::::::::::::::::. ::::::: ::::
NP_001 LVMDVQTQQRFPSNLLFTSASGELWKMVRIGGQPLGFDECGIVAQISEPLAAADIPAYYI
     240       250       260       270       280       290         

      300       310       320         
pF1KE0 STFNFDHALVPEDGIGSVIEVLQRRQEGLAS
       :::.::::::::..:..:: .:.  :     
NP_001 STFKFDHALVPEENINGVISALKVSQAEKH 
     300       310       320          

>>XP_016868063 (OMIM: 617033) PREDICTED: GATS-like prote  (290 aa)
 initn: 1109 init1: 472 opt: 1117  Z-score: 1322.9  bits: 252.9 E(85289): 6e-67
Smith-Waterman score: 1117; 62.1% identity (83.8% similar) in 277 aa overlap (1-275:1-276)

               10        20        30        40        50        60
pF1KE0 MELHILEHRVRVLSVARPGLWLYTHPLIKLLFLPRRSRCKFFSLTETPEDYTLMVDEEGF
       :::::::::..: :::. .. :.:. :::: ::  ..:::::::::::::::..::::::
XP_016 MELHILEHRLQVASVAKESIPLFTYGLIKLAFLSSKTRCKFFSLTETPEDYTIIVDEEGF
               10        20        30        40        50        60

               70        80          90       100       110        
pF1KE0 KELPPSEFLQVAEATWLVLNVSSHSGA--AVQAAGVTKIARSVIAPLAEHHVSVLMLSTY
        ::: :: :.::.::::.::: : .:.  . :  ::::::.:::::::....::.:::::
XP_016 LELPSSEHLSVADATWLALNVVSGGGSFSSSQPIGVTKIAKSVIAPLADQNISVFMLSTY
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE0 QTDFILVREQDLSVVIHTLAQEFDIYREVGGEPVPVTRDDSSNGFPRTQHGPSPTVHPIQ
       :::::::::.::  : :::..:: : : :.:: : .     .::: . .    :..::..
XP_016 QTDFILVRERDLPFVTHTLSSEFTILRVVNGETVAAENLGITNGFVKPKLVQRPVIHPLS
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE0 SPQNRFCVLTLDPETLPAIATTLIDVLFYSHSTPKEAASSSPEPSSITFFAFSLIEGYIS
       ::.::::: .:::.::::.:: :.::.:::... :.  ... . . : ::.:::::::::
XP_016 SPSNRFCVTSLDPDTLPAVATLLMDVMFYSNGV-KDPMATGDDCGHIRFFSFSLIEGYIS
              190       200       210        220       230         

      240       250       260       270       280       290        
pF1KE0 IVMDAETQKKFPSDLLLTSSSGELWRMVRIGGQPLGFDECGIVAQIAGPLAAADISAYYI
       .:::..::..:::.::.::.:::::.:::::::::::                       
XP_016 LVMDVQTQQRFPSNLLFTSASGELWKMVRIGGQPLGFASEFTRRCLHHALV         
     240       250       260       270       280       290         

      300       310       320         
pF1KE0 STFNFDHALVPEDGIGSVIEVLQRRQEGLAS




329 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:46:40 2016 done: Thu Nov  3 03:46:41 2016
 Total Scan time:  8.170 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]