Result of FASTA (omim) for
pF1KE0494
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0494, 218 aa
1>>>pF1KE0494 218 - 218 aa - 218 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.2113+/-0.000332; mu= 20.2034+/- 0.021
mean_var=67.3336+/-13.811, 0's: 0 Z-trim(115.4): 49 B-trim: 465 in 1/51
Lambda= 0.156300
statistics sampled from 25798 (25850) to 25798 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.303), width: 16
Scan time: 6.300
The best scores are: opt bits E(85289)
XP_016884419 (OMIM: 602101) PREDICTED: claudin-5 i ( 303) 1492 345.0 7.8e-95
NP_003268 (OMIM: 602101) claudin-5 [Homo sapiens] ( 303) 1492 345.0 7.8e-95
NP_001124333 (OMIM: 602101) claudin-5 [Homo sapien ( 303) 1492 345.0 7.8e-95
XP_016884418 (OMIM: 602101) PREDICTED: claudin-5 i ( 303) 1492 345.0 7.8e-95
NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens] ( 217) 826 194.7 1e-49
NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens] ( 220) 813 191.8 7.7e-49
NP_067018 (OMIM: 615798) claudin-6 precursor [Homo ( 220) 807 190.4 2e-48
NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens] ( 209) 762 180.2 2.2e-45
NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sa ( 211) 684 162.6 4.3e-40
NP_001171951 (OMIM: 609131) claudin-7 isoform 1 pr ( 211) 658 156.8 2.5e-38
NP_001298 (OMIM: 609131) claudin-7 isoform 1 precu ( 211) 658 156.8 2.5e-38
NP_001116867 (OMIM: 248190,610036) claudin-19 isof ( 211) 641 152.9 3.6e-37
NP_683763 (OMIM: 248190,610036) claudin-19 isoform ( 224) 641 153.0 3.7e-37
NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens] ( 225) 630 150.5 2.1e-36
NP_036263 (OMIM: 617005) claudin-17 [Homo sapiens] ( 224) 579 139.0 6e-33
NP_001139550 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 558 134.3 1.7e-31
NP_036262 (OMIM: 605608,614035) claudin-14 [Homo s ( 239) 558 134.3 1.7e-31
NP_001139549 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 558 134.3 1.7e-31
NP_001139551 (OMIM: 605608,614035) claudin-14 [Hom ( 239) 558 134.3 1.7e-31
NP_652763 (OMIM: 605608,614035) claudin-14 [Homo s ( 239) 558 134.3 1.7e-31
NP_065117 (OMIM: 300520) claudin-2 [Homo sapiens] ( 230) 498 120.7 1.9e-27
NP_001164566 (OMIM: 300520) claudin-2 [Homo sapien ( 230) 498 120.7 1.9e-27
NP_001164563 (OMIM: 300520) claudin-2 [Homo sapien ( 230) 498 120.7 1.9e-27
NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens] ( 228) 465 113.3 3.3e-25
NP_001172009 (OMIM: 615778) claudin-15 [Homo sapie ( 228) 465 113.3 3.3e-25
NP_001171952 (OMIM: 609131) claudin-7 isoform 2 pr ( 145) 454 110.6 1.4e-24
NP_001172046 (OMIM: 248190,610036) claudin-19 isof ( 218) 428 104.9 1e-22
NP_005593 (OMIM: 601326) claudin-11 isoform 1 [Hom ( 207) 331 83.0 3.9e-16
NP_057453 (OMIM: 609210) claudin-18 isoform 1 prec ( 261) 316 79.8 4.7e-15
NP_001002026 (OMIM: 609210) claudin-18 isoform 2 [ ( 261) 306 77.5 2.3e-14
NP_006571 (OMIM: 248250,603959) claudin-16 [Homo s ( 305) 237 62.0 1.2e-09
NP_919260 (OMIM: 609203) claudin-23 [Homo sapiens] ( 292) 209 55.7 9.3e-08
NP_001171985 (OMIM: 601326) claudin-11 isoform 2 p ( 123) 178 48.3 6.7e-06
NP_036261 (OMIM: 611232) claudin-12 [Homo sapiens] ( 244) 149 42.1 0.00098
NP_001172002 (OMIM: 611232) claudin-12 [Homo sapie ( 244) 149 42.1 0.00098
NP_001172001 (OMIM: 611232) claudin-12 [Homo sapie ( 244) 149 42.1 0.00098
NP_665810 (OMIM: 606405) voltage-dependent calcium ( 275) 144 41.0 0.0023
>>XP_016884419 (OMIM: 602101) PREDICTED: claudin-5 isofo (303 aa)
initn: 1492 init1: 1492 opt: 1492 Z-score: 1823.6 bits: 345.0 E(85289): 7.8e-95
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:86-303)
10 20 30
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMW
::::::::::::::::::::::::::::::
XP_016 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE0 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE0 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE0 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
240 250 260 270 280 290
pF1KE0 DYDKKNYV
::::::::
XP_016 DYDKKNYV
300
>>NP_003268 (OMIM: 602101) claudin-5 [Homo sapiens] (303 aa)
initn: 1492 init1: 1492 opt: 1492 Z-score: 1823.6 bits: 345.0 E(85289): 7.8e-95
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:86-303)
10 20 30
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMW
::::::::::::::::::::::::::::::
NP_003 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE0 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE0 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE0 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
240 250 260 270 280 290
pF1KE0 DYDKKNYV
::::::::
NP_003 DYDKKNYV
300
>>NP_001124333 (OMIM: 602101) claudin-5 [Homo sapiens] (303 aa)
initn: 1492 init1: 1492 opt: 1492 Z-score: 1823.6 bits: 345.0 E(85289): 7.8e-95
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:86-303)
10 20 30
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMW
::::::::::::::::::::::::::::::
NP_001 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE0 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE0 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE0 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
240 250 260 270 280 290
pF1KE0 DYDKKNYV
::::::::
NP_001 DYDKKNYV
300
>>XP_016884418 (OMIM: 602101) PREDICTED: claudin-5 isofo (303 aa)
initn: 1492 init1: 1492 opt: 1492 Z-score: 1823.6 bits: 345.0 E(85289): 7.8e-95
Smith-Waterman score: 1492; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:86-303)
10 20 30
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMW
::::::::::::::::::::::::::::::
XP_016 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
60 70 80 90 100 110
40 50 60 70 80 90
pF1KE0 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
120 130 140 150 160 170
100 110 120 130 140 150
pF1KE0 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYLFCGLLALVPLCWFANIVVREFYDP
180 190 200 210 220 230
160 170 180 190 200 210
pF1KE0 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPRRPTATG
240 250 260 270 280 290
pF1KE0 DYDKKNYV
::::::::
XP_016 DYDKKNYV
300
>>NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens] (217 aa)
initn: 805 init1: 787 opt: 826 Z-score: 1013.7 bits: 194.7 E(85289): 1e-49
Smith-Waterman score: 826; 54.5% identity (81.5% similar) in 222 aa overlap (1-218:1-217)
10 20 30 40 50 60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
:.:..::.::..: ..:: : ...:.::.:.::::. ..::.::..:.::::::::::::
NP_066 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT
.::::::::.::: ..:::::: : :.:::...:.:...:::::::: ::::..::
NP_066 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGAKARIVLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL
.::. :. :.:.:.:.:: :. ....::.: : . : ::::.::.::::.::::.:: :
NP_066 AGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGL
130 140 150 160 170 180
190 200 210
pF1KE0 LCCGAWVCTGRPDLSFP----VKYSAPRRPTATGDYDKKNYV
::: .: :.. : . :: : : :.: ::..::
NP_066 LCC---TCPP-PQVERPRGPRLGYSIPSRSGASG-LDKRDYV
190 200 210
>>NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens] (220 aa)
initn: 820 init1: 771 opt: 813 Z-score: 997.8 bits: 191.8 E(85289): 7.7e-49
Smith-Waterman score: 813; 55.0% identity (77.9% similar) in 222 aa overlap (3-218:2-220)
10 20 30 40 50 60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
: .::: : .: ..:: : :. :.::::.:.::. ::.:.:. :.::::.:::::::
NP_001 MSMGLEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTG
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT
.::::::::.::: ..:::::: : :.::: .:.:.:.:::::.:: :::.....
NP_001 QMQCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL
.:::.:. .::.:::. : :: ..:.::.: :: .:: :.::.::.::::.:: ..:: :
NP_001 AGVLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGAL
120 130 140 150 160 170
190 200 210
pF1KE0 LCCGAWVCTGRPD--LSFPVKYSAPRR--PTAT-GD-YDKKNYV
:::. : : . : ::::: : :. : ::.:.::
NP_001 LCCS---CPPREKKYTATKVVYSAPRSTGPGASLGTGYDRKDYV
180 190 200 210 220
>>NP_067018 (OMIM: 615798) claudin-6 precursor [Homo sap (220 aa)
initn: 815 init1: 784 opt: 807 Z-score: 990.5 bits: 190.4 E(85289): 2e-48
Smith-Waterman score: 807; 52.7% identity (80.9% similar) in 220 aa overlap (1-218:1-220)
10 20 30 40 50 60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
:.::...:::.:: :.:: . ...:.::::.::::. ..::.::..:.::::::::::::
NP_067 MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT
.::::::::.::: ..:::::: : :.:.:. .:.: ::::.::::: .:::..::
NP_067 QMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEKDSKARLVLT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL
.:..... :.:.:.:.:: :. ..:.::.: : .:: ::::.::.::::..::..:: :
NP_067 SGIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKRELGASLYLGWAASGLLLLGGGL
130 140 150 160 170 180
190 200 210
pF1KE0 LCCGAWVCTGRPDLSFPVKYS--APRRPTATGDYDKKNYV
::: .. . ..:: :: . ..: ::::
NP_067 LCCTCPSGGSQGPSHYMARYSTSAPAISRGPSEYPTKNYV
190 200 210 220
>>NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens] (209 aa)
initn: 741 init1: 720 opt: 762 Z-score: 935.9 bits: 180.2 E(85289): 2.2e-45
Smith-Waterman score: 762; 48.3% identity (82.3% similar) in 209 aa overlap (1-209:1-206)
10 20 30 40 50 60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
:.: .:...:..: ..:: ...: :.::::.::::. ::::.:: :.::::.:::::::
NP_001 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALT
.::::::::.::: ..::::::.. ....: ........:..::.:. :::.. ..
NP_001 QMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 GGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCL
.::..:. ::...::. : :. ....::.: : .:: :.::.::.::::..::..:: :
NP_001 AGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGL
130 140 150 160 170 180
190 200 210
pF1KE0 LCCGAWVCTGRPDLSFPVKYSAPRRPTATGDYDKKNYV
:::. : : : . .:::: : .:.
NP_001 LCCN---CPPRTDKPYSAKYSAARSAAASNYV
190 200
>>NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sapien (211 aa)
initn: 662 init1: 397 opt: 684 Z-score: 840.8 bits: 162.6 E(85289): 4.3e-40
Smith-Waterman score: 684; 45.3% identity (74.3% similar) in 214 aa overlap (1-212:1-210)
10 20 30 40 50 60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
:..:.:..::..: ..:: : :.. .::.:.. .. ::::::. ..::::::: ::::
NP_066 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPA-KARVAL
..::::.::.: ::. .::.::: : ..::. .:.::. .: .: :. . : :.:.
NP_066 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 TGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGC
::...:. :: :: :..: .:.::::: .::. .::.: ::. ::::..: ..::
NP_066 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
130 140 150 160 170 180
180 190 200 210
pF1KE0 LLCCGAWVCTGRPDLSFPVKYSAPR-RPTATGDYDKKNYV
::::. : : :.:. :. :.. ::
NP_066 LLCCS---CP-RKTTSYPTPRPYPKPAPSSGKDYV
190 200 210
>>NP_001171951 (OMIM: 609131) claudin-7 isoform 1 precur (211 aa)
initn: 663 init1: 412 opt: 658 Z-score: 809.1 bits: 156.8 E(85289): 2.5e-38
Smith-Waterman score: 658; 44.7% identity (76.2% similar) in 206 aa overlap (1-204:1-203)
10 20 30 40 50 60
pF1KE0 MGSAALEILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTG
:....:..::. . :.:: ::. ..:.::.... ::.:::. .:::::.::.::::
NP_001 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 HMQCKVYDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAK-ARVAL
:.::.::::::::. .::.::: : ...:.:.:.::. : .:: : . .: ::.:.
NP_001 MMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 TGGVLYLFCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGC
::.... :: ::: :... .: .::.: .:.. :::.: :..::::..::...::
NP_001 GGGIIFIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGA
130 140 150 160 170 180
180 190 200 210
pF1KE0 LLCCGAWVCTGRPDLS-FPVKYSAPRRPTATGDYDKKNYV
:: :. : : . . . : : :.
NP_001 LLSCS---CPGNESKAGYRVPRSYPKSNSSKEYV
190 200 210
218 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:21:40 2016 done: Thu Nov 3 04:21:41 2016
Total Scan time: 6.300 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]