FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0492, 280 aa
  1>>>pF1KE0492 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1724+/-0.000742; mu= 3.5499+/- 0.045
 mean_var=146.4422+/-30.012, 0's: 0 Z-trim(114.4): 6  B-trim: 722 in 1/50
 Lambda= 0.105984
 statistics sampled from 14937 (14939) to 14937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.459), width:  16
 Scan time:  2.880

The best scores are:                                      opt bits E(32554)
CCDS54524.1 TEX33 gene_id:339669|Hs108|chr22       ( 280) 1878 297.8 5.8e-81
CCDS13937.1 TEX33 gene_id:339669|Hs108|chr22       ( 195) 1294 208.4 3.2e-54


>>CCDS54524.1 TEX33 gene_id:339669|Hs108|chr22            (280 aa)
 initn: 1878 init1: 1878 opt: 1878  Z-score: 1567.0  bits: 297.8 E(32554): 5.8e-81
Smith-Waterman score: 1878; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KE0 MELGHGAGTTTFTRAHLNDKEGQQDLDPWKAAYSSLDTSKFKNQGLSSPQPLPLGASAQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MELGHGAGTTTFTRAHLNDKEGQQDLDPWKAAYSSLDTSKFKNQGLSSPQPLPLGASAQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSLGQCHLKEIPPPPPTAASRDSLGMDPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SSLGQCHLKEIPPPPPTAASRDSLGMDPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 WPSRTQNPVEISSVFSDYYDLGYNMRSNLFRGAAEETKSLMKASYTPEVIEKSVRDLEHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 WPSRTQNPVEISSVFSDYYDLGYNMRSNLFRGAAEETKSLMKASYTPEVIEKSVRDLEHW
              190       200       210       220       230       240

              250       260       270       280
pF1KE0 HGRKTDDLGRWHQKNAMNLNLQKALEEKYGENSKSKSSKY
       ::::::::::::::::::::::::::::::::::::::::
CCDS54 HGRKTDDLGRWHQKNAMNLNLQKALEEKYGENSKSKSSKY
              250       260       270       280

>>CCDS13937.1 TEX33 gene_id:339669|Hs108|chr22            (195 aa)
 initn: 1294 init1: 1294 opt: 1294  Z-score: 1086.8  bits: 208.4 E(32554): 3.2e-54
Smith-Waterman score: 1294; 100.0% identity (100.0% similar) in 195 aa overlap (86-280:1-195)

          60        70        80        90       100       110     
pF1KE0 ASAQGSSLGQCHLKEIPPPPPTAASRDSLGMDPQSRSLKNAGSRSSSRENRATSGEGAQP
                                     ::::::::::::::::::::::::::::::
CCDS13                               MDPQSRSLKNAGSRSSSRENRATSGEGAQP
                                             10        20        30

         120       130       140       150       160       170     
pF1KE0 CQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSNVVDQLVSEEQAQKAIDEVFEGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSNVVDQLVSEEQAQKAIDEVFEGQ
               40        50        60        70        80        90

         180       190       200       210       220       230     
pF1KE0 KRASSWPSRTQNPVEISSVFSDYYDLGYNMRSNLFRGAAEETKSLMKASYTPEVIEKSVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRASSWPSRTQNPVEISSVFSDYYDLGYNMRSNLFRGAAEETKSLMKASYTPEVIEKSVR
              100       110       120       130       140       150

         240       250       260       270       280
pF1KE0 DLEHWHGRKTDDLGRWHQKNAMNLNLQKALEEKYGENSKSKSSKY
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLEHWHGRKTDDLGRWHQKNAMNLNLQKALEEKYGENSKSKSSKY
              160       170       180       190     




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:27:35 2016 done: Thu Nov  3 04:27:35 2016
 Total Scan time:  2.880 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]