FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0490, 407 aa
  1>>>pF1KE0490 407 - 407 aa - 407 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5115+/-0.000862; mu= 16.4848+/- 0.052
 mean_var=69.3285+/-13.768, 0's: 0 Z-trim(106.8): 18  B-trim: 3 in 1/50
 Lambda= 0.154035
 statistics sampled from 9207 (9211) to 9207 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.880

The best scores are:                                      opt bits E(32554)
CCDS13969.2 TMEM184B gene_id:25829|Hs108|chr22     ( 407) 2732 616.1 1.9e-176
CCDS43537.1 TMEM184A gene_id:202915|Hs108|chr7     ( 413) 1752 398.3 6.8e-111
CCDS3770.1 TMEM184C gene_id:55751|Hs108|chr4       ( 438)  645 152.3 8.1e-37


>>CCDS13969.2 TMEM184B gene_id:25829|Hs108|chr22          (407 aa)
 initn: 2732 init1: 2732 opt: 2732  Z-score: 3281.4  bits: 616.1 E(32554): 1.9e-176
Smith-Waterman score: 2732; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407)

               10        20        30        40        50        60
pF1KE0 MTVRGDVLAPDPASPTTAAASPSVSVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTVRGDVLAPDPASPTTAAASPSVSVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQATLQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQATLQF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 CVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 SPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIIC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 VEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPA
              310       320       330       340       350       360

              370       380       390       400       
pF1KE0 YQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YQQYTQQSTLEPGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSDDEF
              370       380       390       400       

>>CCDS43537.1 TMEM184A gene_id:202915|Hs108|chr7          (413 aa)
 initn: 1705 init1: 1308 opt: 1752  Z-score: 2104.3  bits: 398.3 E(32554): 6.8e-111
Smith-Waterman score: 1752; 64.6% identity (87.0% similar) in 401 aa overlap (10-405:21-412)

                          10        20        30        40         
pF1KE0            MTVRGDVLAPDPASPTTAAASPSVSVIPEGSPTAMEQPVFLMTTA-AQA
                           :.:. : .. :.:... . ..:  :   : ...:.: :..
CCDS43 MSNVSGILETAGVPLVSANWPQPSPPPAVPAGPQMDHMGNSSQGA---PWLFLTSALARG
               10        20        30        40           50       

       50        60        70        80        90       100        
pF1KE0 ISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYY
       .::.::::::..::::::.::: :. :.:::::.:.:.::::::::::::::.. . :::
CCDS43 VSGIFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLLLLGDHQYY
        60        70        80        90       100       110       

      110       120       130       140       150       160        
pF1KE0 VYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIG
       ::: .:::::::.:::.:::::..:::::..::.:::::::.:::.:::::: : :::::
CCDS43 VYFDSVRDCYEAFVIYSFLSLCFQYLGGEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIG
       120       130       140       150       160       170       

      170       180       190       200       210       220        
pF1KE0 FLRFCKQATLQFCVVKPLMAVSTVVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYA
       :::::::::::::.:::.:::.:..:::::::.::::.: :::::::.::: ::::::::
CCDS43 FLRFCKQATLQFCLVKPVMAVTTIILQAFGKYHDGDFNVRSGYLYVTLIYNASVSLALYA
       180       190       200       210       220       230       

      230       240       250       260       270        280       
pF1KE0 LFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIH-SARVSVGE
       ::::::.::::: :..:::::. .:.:::::::::.::::::.::.::... :.  ..: 
CCDS43 LFLFYFTTRELLRPFQPVLKFLTIKAVIFLSFWQGLLLAILERCGVIPEVETSGGNKLGA
       240       250       260       270       280       290       

       290       300       310       320       330       340       
pF1KE0 GTVAAGYQDFIICVEMFFAALALRHAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPH
       ::.:::::.:::::::.::..:::.::  .:::.:. .. .  :::.::::...::..:.
CCDS43 GTLAAGYQNFIICVEMLFASVALRYAFPCQVYAEKKENSPAPPAPMQSISSGIRETVSPQ
       300       310       320       330       340       350       

       350       360       370          380       390       400    
pF1KE0 DIVQDAIHNFSPAYQQYTQQSTLE---PGPTWRGGAHGLSRSHSLSGARDNEKTLLLSSD
       :::::::::::::::.::::.: :   ::    ::. :  .:.::      :: .:. :.
CCDS43 DIVQDAIHNFSPAYQHYTQQATHEAPRPGTHPSGGSGGSRKSRSL------EKRMLIPSE
       360       370       380       390       400             410 

          
pF1KE0 DEF
       :  
CCDS43 DL 
          

>>CCDS3770.1 TMEM184C gene_id:55751|Hs108|chr4            (438 aa)
 initn: 628 init1: 368 opt: 645  Z-score: 774.4  bits: 152.3 E(32554): 8.1e-37
Smith-Waterman score: 645; 37.7% identity (68.9% similar) in 289 aa overlap (44-330:46-326)

            20        30        40        50        60        70   
pF1KE0 SPTTAAASPSVSVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYS
                                     : :  :.:.:.  .. :.   : .::  :.
CCDS37 PLVAVIYLVSIVVAVPLCVWELQKLEVGIHTKAWFIAGIFLLLTIPISLWVILQHLVHYT
          20        30        40        50        60        70     

            80        90       100       110       120       130   
pF1KE0 CPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEY
        :. :. :.:::..::::..:::..: .       .:  : :.:::: :::::...  .:
CCDS37 QPELQKPIIRILWMVPIYSLDSWIALKY---PGIAIYVDTCRECYEAYVIYNFMGFLTNY
          80        90       100          110       120       130  

           140       150       160         170       180       190 
pF1KE0 LGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIG--FLRFCKQATLQFCVVKPLMAVST
       : ..   .  :     ... .   ::     ...:  .:  :: ..::. ::.:. .. .
CCDS37 LTNRYPNLVLILEAKDQQKHFPPLCCC--PPWAMGEVLLFRCKLGVLQYTVVRPFTTIVA
            140       150         160       170       180       190

             200       210       220       230       240       250 
pF1KE0 VVLQAFGKYRDGDFDVTSGYLYVTIIYNISVSLALYALFLFYFATRELLSPYSPVLKFFM
       .. . .: : .:.:. .... :..:: :.:  .:.: :.::: . .: ::: .:: ::. 
CCDS37 LICELLGIYDEGNFSFSNAWTYLVIINNMSQLFAMYCLLLFYKVLKEELSPIQPVGKFLC
              200       210       220       230       240       250

             260       270       280       290       300       310 
pF1KE0 VKSVIFLSFWQGMLLAILEKCGAIPKIHSARVSVGEGTVAAGYQDFIICVEMFFAALALR
       :: :.:.::::....:.: : :.: . :. . .. :. ::.: ::::::.:::.::.: .
CCDS37 VKLVVFVSFWQAVVIALLVKVGVISEKHTWEWQTVEA-VATGLQDFIICIEMFLAAIAHH
              260       270       280        290       300         

             320       330       340       350       360       370 
pF1KE0 HAFTYKVYADKRLDAQGRCAPMKSISSSLKETMNPHDIVQDAIHNFSPAYQQYTQQSTLE
       ..:.:: :...    .: :                                         
CCDS37 YTFSYKPYVQEA--EEGSCFDSFLAMWDVSDIRDDISEQVRHVGRTVRGHPRKKLFPEDQ
     310       320         330       340       350       360       




407 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:38:28 2016 done: Thu Nov  3 04:38:28 2016
 Total Scan time:  2.880 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]