FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0489, 169 aa
  1>>>pF1KE0489 169 - 169 aa - 169 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4111+/-0.0003; mu= 17.5474+/- 0.019
 mean_var=61.3300+/-12.515, 0's: 0 Z-trim(117.5): 7  B-trim: 273 in 1/53
 Lambda= 0.163771
 statistics sampled from 29532 (29538) to 29532 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.346), width:  16
 Scan time:  4.990

The best scores are:                                      opt bits E(85289)
NP_001243460 (OMIM: 109610) translocator protein [ ( 169) 1240 300.6 7.6e-82
NP_001243459 (OMIM: 109610) translocator protein [ ( 169) 1240 300.6 7.6e-82
NP_000705 (OMIM: 109610) translocator protein [Hom ( 169) 1240 300.6 7.6e-82


>>NP_001243460 (OMIM: 109610) translocator protein [Homo  (169 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1590.3  bits: 300.6 E(85289): 7.6e-82
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE0 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
               70        80        90       100       110       120

              130       140       150       160         
pF1KE0 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
              130       140       150       160         

>>NP_001243459 (OMIM: 109610) translocator protein [Homo  (169 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1590.3  bits: 300.6 E(85289): 7.6e-82
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE0 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
               70        80        90       100       110       120

              130       140       150       160         
pF1KE0 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
              130       140       150       160         

>>NP_000705 (OMIM: 109610) translocator protein [Homo sa  (169 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1590.3  bits: 300.6 E(85289): 7.6e-82
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE0 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
               70        80        90       100       110       120

              130       140       150       160         
pF1KE0 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
              130       140       150       160         




169 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:45:30 2016 done: Thu Nov  3 04:45:31 2016
 Total Scan time:  4.990 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]