FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0489, 169 aa
  1>>>pF1KE0489 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6864+/-0.000644; mu= 15.7807+/- 0.039
 mean_var=60.4690+/-12.391, 0's: 0 Z-trim(110.7): 12  B-trim: 0 in 0/51
 Lambda= 0.164933
 statistics sampled from 11774 (11780) to 11774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.362), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS33661.1 TSPO gene_id:706|Hs108|chr22           ( 169) 1240 302.7 7.1e-83
CCDS34444.1 TSPO2 gene_id:222642|Hs108|chr6        ( 170)  378 97.6   4e-21


>>CCDS33661.1 TSPO gene_id:706|Hs108|chr22                (169 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1601.3  bits: 302.7 E(32554): 7.1e-83
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE0 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA
               70        80        90       100       110       120

              130       140       150       160         
pF1KE0 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE
              130       140       150       160         

>>CCDS34444.1 TSPO2 gene_id:222642|Hs108|chr6             (170 aa)
 initn: 391 init1: 254 opt: 378  Z-score: 492.8  bits: 97.6 E(32554): 4e-21
Smith-Waterman score: 378; 42.3% identity (70.5% similar) in 149 aa overlap (11-158:8-156)

               10        20        30        40        50        60
pF1KE0 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM
                 :.: : :: ..   :.. .   :  : .  :: : . ::  :  ..::..
CCDS34    MRLQGAIFVLLPHLGPILVWLFTRDHMSGWCEGPRMLSWCPFYKVLLLVQTAIYSVV
                  10        20        30        40        50       

               70         80        90       100       110         
pF1KE0 GYGSYLVWKELGG-FTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAA
       ::.::::::.::: .    ..:::::. ::...:.   .:: ... : ::. :::. : .
CCDS34 GYASYLVWKDLGGGLGWPLALPLGLYAVQLTISWTVLVLFFTVHNPGLALLHLLLLYGLV
        60        70        80        90       100       110       

     120       130       140       150       160            
pF1KE0 AATTVAWYQVSPLAARLLYPYLAWLAFTTTLNYCVWRDNHGWRGGRRLPE   
       ..:.. :. .. ::: :: ::::::. :..:.: .:::.              
CCDS34 VSTALIWHPINKLAALLLLPYLAWLTVTSALTYHLWRDSLCPVHQPQPTEKSD
       120       130       140       150       160       170




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 04:45:29 2016 done: Thu Nov  3 04:45:30 2016
 Total Scan time:  1.900 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]