Result of FASTA (ccds) for
pF1KE0486
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0486, 180 aa
1>>>pF1KE0486 180 - 180 aa - 180 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8996+/-0.000721; mu= 14.1395+/- 0.043
mean_var=52.9170+/-10.738, 0's: 0 Z-trim(107.9): 14 B-trim: 571 in 1/50
Lambda= 0.176310
statistics sampled from 9831 (9840) to 9831 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.302), width: 16
Scan time: 2.060
The best scores are: opt bits E(32554)
CCDS14025.1 CENPM gene_id:79019|Hs108|chr22 ( 180) 1160 302.5 8.9e-83
CCDS77682.1 CENPM gene_id:79019|Hs108|chr22 ( 146) 953 249.8 5.3e-67
CCDS46720.1 CENPM gene_id:79019|Hs108|chr22 ( 107) 668 177.3 2.7e-45
CCDS77681.1 CENPM gene_id:79019|Hs108|chr22 ( 73) 461 124.6 1.4e-29
CCDS46719.1 CENPM gene_id:79019|Hs108|chr22 ( 58) 296 82.5 4.8e-17
CCDS77683.1 CENPM gene_id:79019|Hs108|chr22 ( 125) 291 81.4 2.3e-16
>>CCDS14025.1 CENPM gene_id:79019|Hs108|chr22 (180 aa)
initn: 1160 init1: 1160 opt: 1160 Z-score: 1599.5 bits: 302.5 E(32554): 8.9e-83
Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)
10 20 30 40 50 60
pF1KE0 MSVLRPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSVLRPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRIDLIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PRIDLIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 AHTYQSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AHTYQSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
130 140 150 160 170 180
>>CCDS77682.1 CENPM gene_id:79019|Hs108|chr22 (146 aa)
initn: 953 init1: 953 opt: 953 Z-score: 1316.4 bits: 249.8 E(32554): 5.3e-67
Smith-Waterman score: 953; 100.0% identity (100.0% similar) in 146 aa overlap (35-180:1-146)
10 20 30 40 50 60
pF1KE0 RPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNRPRID
::::::::::::::::::::::::::::::
CCDS77 MLKEDCASELKVHLAKSLPLPSSVNRPRID
10 20 30
70 80 90 100 110 120
pF1KE0 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKLAHTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKLAHTY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 QSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
100 110 120 130 140
>>CCDS46720.1 CENPM gene_id:79019|Hs108|chr22 (107 aa)
initn: 668 init1: 668 opt: 668 Z-score: 926.7 bits: 177.3 E(32554): 2.7e-45
Smith-Waterman score: 668; 99.1% identity (100.0% similar) in 106 aa overlap (1-106:1-106)
10 20 30 40 50 60
pF1KE0 MSVLRPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSVLRPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRIDLIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKL
:::::::::::::::::::::::::::::::::::::::::::.::
CCDS46 PRIDLIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGGGRL
70 80 90 100
130 140 150 160 170 180
pF1KE0 AHTYQSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
>>CCDS77681.1 CENPM gene_id:79019|Hs108|chr22 (73 aa)
initn: 461 init1: 461 opt: 461 Z-score: 644.7 bits: 124.6 E(32554): 1.4e-29
Smith-Waterman score: 461; 98.6% identity (100.0% similar) in 72 aa overlap (35-106:1-72)
10 20 30 40 50 60
pF1KE0 RPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNRPRID
::::::::::::::::::::::::::::::
CCDS77 MLKEDCASELKVHLAKSLPLPSSVNRPRID
10 20 30
70 80 90 100 110 120
pF1KE0 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKLAHTY
:::::::::::::::::::::::::::::::::::::::.::
CCDS77 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGGGRL
40 50 60 70
130 140 150 160 170 180
pF1KE0 QSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
>>CCDS46719.1 CENPM gene_id:79019|Hs108|chr22 (58 aa)
initn: 296 init1: 296 opt: 296 Z-score: 419.4 bits: 82.5 E(32554): 4.8e-17
Smith-Waterman score: 296; 97.9% identity (100.0% similar) in 48 aa overlap (133-180:11-58)
110 120 130 140 150 160
pF1KE0 GAGRESHCSIHRHTVVKLAHTYQSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSA
:.::::::::::::::::::::::::::::
CCDS46 MGRVWDLPGVLKVEGFRATMAQRLVRVLQICAGHVPGVSA
10 20 30 40
170 180
pF1KE0 LNLLSLLRSSEGPSLEDL
::::::::::::::::::
CCDS46 LNLLSLLRSSEGPSLEDL
50
>>CCDS77683.1 CENPM gene_id:79019|Hs108|chr22 (125 aa)
initn: 294 init1: 277 opt: 291 Z-score: 407.4 bits: 81.4 E(32554): 2.3e-16
Smith-Waterman score: 291; 74.2% identity (83.3% similar) in 66 aa overlap (35-100:1-64)
10 20 30 40 50 60
pF1KE0 RPLDKLPGLNTATILLVGTEDALLQQLADSMLKEDCASELKVHLAKSLPLPSSVNRPRID
::::::::::::::::::::::::::::::
CCDS77 MLKEDCASELKVHLAKSLPLPSSVNRPRID
10 20 30
70 80 90 100 110 120
pF1KE0 LIVFVVNLHSKYSLQNTEESLRHVDASFFLGKVCFLATGAGRESHCSIHRHTVVKLAHTY
:::::::::::: ..... : : : . ::::
CCDS77 LIVFVVNLHSKYRIREARTSAFSVVK--FCSLVCFLTLAWPPQSPEHRGVPAPCGCQLLL
40 50 60 70 80
130 140 150 160 170 180
pF1KE0 QSPLLYCDLEVEGFRATMAQRLVRVLQICAGHVPGVSALNLLSLLRSSEGPSLEDL
CCDS77 GEGVFPRHRCWAGEPLQHSPAHRGEAGPHLSKPPALL
90 100 110 120
180 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 04:54:26 2016 done: Thu Nov 3 04:54:27 2016
Total Scan time: 2.060 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]