FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0478, 375 aa
  1>>>pF1KE0478 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2380+/-0.000821; mu= 12.4812+/- 0.049
 mean_var=91.8562+/-18.543, 0's: 0 Z-trim(109.3): 37  B-trim: 0 in 0/50
 Lambda= 0.133820
 statistics sampled from 10765 (10784) to 10765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.331), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS4232.1 CD14 gene_id:929|Hs108|chr5             ( 375) 2497 492.1 3.4e-139


>>CCDS4232.1 CD14 gene_id:929|Hs108|chr5                  (375 aa)
 initn: 2497 init1: 2497 opt: 2497  Z-score: 2612.4  bits: 492.1 E(32554): 3.4e-139
Smith-Waterman score: 2497; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KE0 MERASCLLLLLLPLVHVSATTPEPCELDDEDFRCVCNFSEPQPDWSEAFQCVSAVEVEIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MERASCLLLLLLPLVHVSATTPEPCELDDEDFRCVCNFSEPQPDWSEAFQCVSAVEVEIH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 AGGLNLEPFLKRVDADADPRQYADTVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AGGLNLEPFLKRVDADADPRQYADTVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 VLDLSCNRLNRAPQPDELPEVDNLTLDGNPFLVPGTALPHEGSMNSGVVPACARSTLSVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VLDLSCNRLNRAPQPDELPEVDNLTLDGNPFLVPGTALPHEGSMNSGVVPACARSTLSVG
              310       320       330       340       350       360

              370     
pF1KE0 VSGTLVLLQGARGFA
       :::::::::::::::
CCDS42 VSGTLVLLQGARGFA
              370     




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:16:39 2016 done: Thu Nov  3 05:16:40 2016
 Total Scan time:  3.040 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]