Result of FASTA (ccds) for
pF1KE0477
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0477, 305 aa
1>>>pF1KE0477 305 - 305 aa - 305 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8537+/-0.00085; mu= 12.0553+/- 0.051
mean_var=60.7481+/-12.367, 0's: 0 Z-trim(105.8): 22 B-trim: 0 in 0/50
Lambda= 0.164554
statistics sampled from 8593 (8599) to 8593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.264), width: 16
Scan time: 2.440
The best scores are: opt bits E(32554)
CCDS3668.2 PPA2 gene_id:27068|Hs108|chr4 ( 305) 2074 500.8 5.3e-142
CCDS3667.1 PPA2 gene_id:27068|Hs108|chr4 ( 334) 1084 265.8 3.2e-71
CCDS3669.2 PPA2 gene_id:27068|Hs108|chr4 ( 232) 1077 264.1 7.2e-71
CCDS34043.1 PPA2 gene_id:27068|Hs108|chr4 ( 168) 801 198.6 2.8e-51
CCDS7299.1 PPA1 gene_id:5464|Hs108|chr10 ( 289) 642 160.9 1.1e-39
>>CCDS3668.2 PPA2 gene_id:27068|Hs108|chr4 (305 aa)
initn: 2074 init1: 2074 opt: 2074 Z-score: 2662.9 bits: 500.8 E(32554): 5.3e-142
Smith-Waterman score: 2074; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KE0 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VKDGKLRYVANIFPYKGYIWNYGTLPQILSCGEVIHVKILGILALIDEGETDWKLIAINA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 VKDGKLRYVANIFPYKGYIWNYGTLPQILSCGEVIHVKILGILALIDEGETDWKLIAINA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
250 260 270 280 290 300
pF1KE0 HFLGK
:::::
CCDS36 HFLGK
>>CCDS3667.1 PPA2 gene_id:27068|Hs108|chr4 (334 aa)
initn: 1077 init1: 1077 opt: 1084 Z-score: 1392.1 bits: 265.8 E(32554): 3.2e-71
Smith-Waterman score: 2006; 91.3% identity (91.3% similar) in 334 aa overlap (1-305:1-334)
10 20 30 40 50 60
pF1KE0 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
70 80 90 100 110 120
130 140 150
pF1KE0 VKDGKLRYVANIFPYKGYIWNYGTLPQ-----------------------------ILSC
::::::::::::::::::::::::::: ::::
CCDS36 VKDGKLRYVANIFPYKGYIWNYGTLPQTWEDPHEKDKSTNCFGDNDPIDVCEIGSKILSC
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE0 GEVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 GEVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE0 YKVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 YKVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPF
250 260 270 280 290 300
280 290 300
pF1KE0 RCTQEEARSLVESVSSSPNKESNEEEQVWHFLGK
::::::::::::::::::::::::::::::::::
CCDS36 RCTQEEARSLVESVSSSPNKESNEEEQVWHFLGK
310 320 330
>>CCDS3669.2 PPA2 gene_id:27068|Hs108|chr4 (232 aa)
initn: 1077 init1: 1077 opt: 1077 Z-score: 1385.8 bits: 264.1 E(32554): 7.2e-71
Smith-Waterman score: 1413; 76.1% identity (76.1% similar) in 305 aa overlap (1-305:1-232)
10 20 30 40 50 60
pF1KE0 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
::::::::::::::
CCDS36 SPFHDIPLKVNSKE----------------------------------------------
70
130 140 150 160 170 180
pF1KE0 VKDGKLRYVANIFPYKGYIWNYGTLPQILSCGEVIHVKILGILALIDEGETDWKLIAINA
:::::::::::::::::::::::::::::::::
CCDS36 ---------------------------ILSCGEVIHVKILGILALIDEGETDWKLIAINA
80 90 100
190 200 210 220 230 240
pF1KE0 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
110 120 130 140 150 160
250 260 270 280 290 300
pF1KE0 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
170 180 190 200 210 220
pF1KE0 HFLGK
:::::
CCDS36 HFLGK
230
>>CCDS34043.1 PPA2 gene_id:27068|Hs108|chr4 (168 aa)
initn: 801 init1: 801 opt: 801 Z-score: 1034.1 bits: 198.6 E(32554): 2.8e-51
Smith-Waterman score: 854; 54.8% identity (55.1% similar) in 305 aa overlap (1-305:1-168)
10 20 30 40 50 60
pF1KE0 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYI
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFF--------
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 SPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQY
CCDS34 ------------------------------------------------------------
130 140 150 160 170 180
pF1KE0 VKDGKLRYVANIFPYKGYIWNYGTLPQILSCGEVIHVKILGILALIDEGETDWKLIAINA
CCDS34 ------------------------------------------------------------
190 200 210 220 230 240
pF1KE0 NDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ---------NIDDVKKFKPGYLEATLNWFRLYKVPDGKPENQFAFNGEFKNKAFALEVIK
60 70 80 90 100
250 260 270 280 290 300
pF1KE0 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 STHQCWKALLMKKCNGGAINCTNVQISDSPFRCTQEEARSLVESVSSSPNKESNEEEQVW
110 120 130 140 150 160
pF1KE0 HFLGK
:::::
CCDS34 HFLGK
>>CCDS7299.1 PPA1 gene_id:5464|Hs108|chr10 (289 aa)
initn: 1105 init1: 640 opt: 642 Z-score: 826.1 bits: 160.9 E(32554): 1.1e-39
Smith-Waterman score: 1031; 54.3% identity (74.2% similar) in 291 aa overlap (32-293:1-272)
10 20 30 40 50 60
pF1KE0 SALLRLLRTGAPAAACLRLGTSAGTGSRRAMALYHTEERGQPCSQNYRLFFKNVTGHYIS
:. . ::::. : : .::.:.:: :.:::
CCDS72 MSGFSTEERAAPFSLEYRVFLKNEKGQYIS
10 20 30
70 80 90 100 110 120
pF1KE0 PFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNPIKQYV
::::::. .. ...:.:.::.:::.:::::::::.:.::::: :
CCDS72 PFHDIPIYAD-----------------KDVFHMVVEVPRWSNAKMEIATKDPLNPIKQDV
40 50 60 70
130 140 150
pF1KE0 KDGKLRYVANIFPYKGYIWNYGTLPQ--------------------ILSC---------G
: ::::::::.:::::::::::..:: : : :
CCDS72 KKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARG
80 90 100 110 120 130
160 170 180 190 200 210
pF1KE0 EVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRLY
:.: ::.:::::.:::::::::.::::..::.:....::.:::..::::::::..::: :
CCDS72 EIIGVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRY
140 150 160 170 180 190
220 230 240 250 260 270
pF1KE0 KVPDGKPENQFAFNGEFKNKAFALEVIKSTHQCWKALLMKKCNGGAINCTNVQISDSPFR
:::::::::.::::.:::.: ::...:::::. ::::. :: :: .:.: :. .:.:::.
CCDS72 KVPDGKPENEFAFNAEFKDKDFAIDIIKSTHDHWKALVTKKTNGKGISCMNTTLSESPFK
200 210 220 230 240 250
280 290 300
pF1KE0 CTQEEARSLVESVSSSPNKESNEEEQVWHFLGK
: . ::..:... : ::
CCDS72 CDPDAARAIVDALP--PPCESACTVPTDVDKWFHHQKN
260 270 280
305 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:27:57 2016 done: Thu Nov 3 05:27:57 2016
Total Scan time: 2.440 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]