Result of FASTA (ccds) for
pF1KE0474
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0474, 167 aa
1>>>pF1KE0474 167 - 167 aa - 167 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9749+/-0.000625; mu= 13.9505+/- 0.037
mean_var=69.6781+/-14.150, 0's: 0 Z-trim(111.8): 83 B-trim: 133 in 2/47
Lambda= 0.153648
statistics sampled from 12536 (12644) to 12536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.388), width: 16
Scan time: 1.730
The best scores are: opt bits E(32554)
CCDS348.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 167) 1162 265.8 8.8e-72
CCDS4965.1 PTP4A1 gene_id:7803|Hs108|chr6 ( 173) 1044 239.7 6.7e-64
CCDS6383.1 PTP4A3 gene_id:11156|Hs108|chr8 ( 173) 927 213.7 4.3e-56
CCDS59193.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 142) 752 174.9 1.8e-44
CCDS53292.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 136) 751 174.6 2e-44
CCDS6382.1 PTP4A3 gene_id:11156|Hs108|chr8 ( 148) 602 141.6 1.9e-34
>>CCDS348.1 PTP4A2 gene_id:8073|Hs108|chr1 (167 aa)
initn: 1162 init1: 1162 opt: 1162 Z-score: 1402.2 bits: 265.8 E(32554): 8.8e-72
Smith-Waterman score: 1162; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE0 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECG
70 80 90 100 110 120
130 140 150 160
pF1KE0 MKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ
130 140 150 160
>>CCDS4965.1 PTP4A1 gene_id:7803|Hs108|chr6 (173 aa)
initn: 1046 init1: 1023 opt: 1044 Z-score: 1260.6 bits: 239.7 E(32554): 6.7e-64
Smith-Waterman score: 1044; 87.6% identity (94.7% similar) in 170 aa overlap (1-167:4-173)
10 20 30 40 50
pF1KE0 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEK
::::::::..:.:::::::::::::::::: ::::::::::.::::.:::: . :::
CCDS49 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 EGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALI
:::::::::::::::: ::::::::.:.: :::::::::.::::::::::::::::::::
CCDS49 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
70 80 90 100 110 120
120 130 140 150 160
pF1KE0 ECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
: ::::::::::::::::::::::::::::::::::::::.:.::: ::.:
CCDS49 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
130 140 150 160 170
>>CCDS6383.1 PTP4A3 gene_id:11156|Hs108|chr8 (173 aa)
initn: 929 init1: 912 opt: 927 Z-score: 1120.5 bits: 213.7 E(32554): 4.3e-56
Smith-Waterman score: 927; 77.5% identity (92.3% similar) in 169 aa overlap (1-166:4-172)
10 20 30 40 50
pF1KE0 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEK
::::::::.::..::::::::::::::. : :.:::::.::.::::..::::.:.::
CCDS63 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 EGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALI
.:: :.:::::::::::...:.:::.:.:.:: : :: ::::::::::::::::::::::
CCDS63 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
70 80 90 100 110 120
120 130 140 150 160
pF1KE0 ECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
: :::::::.::::::::::.::::: ::::::::.::::.: . : :::
CCDS63 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
130 140 150 160 170
>>CCDS59193.1 PTP4A2 gene_id:8073|Hs108|chr1 (142 aa)
initn: 752 init1: 752 opt: 752 Z-score: 912.0 bits: 174.9 E(32554): 1.8e-44
Smith-Waterman score: 941; 85.0% identity (85.0% similar) in 167 aa overlap (1-167:1-142)
10 20 30 40 50 60
pF1KE0 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 HVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECG
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGR-------------
70 80 90 100
130 140 150 160
pF1KE0 MKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ
:::::::::::::::::::::::::::::::::::
CCDS59 ------------KRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ
110 120 130 140
>>CCDS53292.1 PTP4A2 gene_id:8073|Hs108|chr1 (136 aa)
initn: 950 init1: 751 opt: 751 Z-score: 911.1 bits: 174.6 E(32554): 2e-44
Smith-Waterman score: 890; 81.4% identity (81.4% similar) in 167 aa overlap (1-167:1-136)
10 20 30 40 50 60
pF1KE0 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGI
::::::::::::::::::::::::::::::::
CCDS53 MNRPAPVEISYENMRFLITHNPTNATLNKFTE----------------------------
10 20 30
70 80 90 100 110 120
pF1KE0 HVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ---DWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECG
40 50 60 70 80
130 140 150 160
pF1KE0 MKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGHCCVQ
90 100 110 120 130
>>CCDS6382.1 PTP4A3 gene_id:11156|Hs108|chr8 (148 aa)
initn: 769 init1: 602 opt: 602 Z-score: 732.1 bits: 141.6 E(32554): 1.9e-34
Smith-Waterman score: 721; 63.9% identity (78.1% similar) in 169 aa overlap (1-166:4-147)
10 20 30 40 50
pF1KE0 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEK
::::::::.::..::::::::::::::. : :.:::::.::.::::..::::.:.::
CCDS63 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 EGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALI
.:: :.:::::::::::...:.:::.:.:.:: : :: ::::::::::::
CCDS63 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGR----------
70 80 90 100 110
120 130 140 150 160
pF1KE0 ECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
:::::.::::: ::::::::.::::.: . : :::
CCDS63 ---------------KRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
120 130 140
167 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:56:04 2016 done: Thu Nov 3 05:56:04 2016
Total Scan time: 1.730 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]