FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0472, 186 aa
  1>>>pF1KE0472 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9528+/-0.000866; mu= 15.0060+/- 0.052
 mean_var=66.4444+/-13.617, 0's: 0 Z-trim(106.2): 20  B-trim: 0 in 0/49
 Lambda= 0.157342
 statistics sampled from 8849 (8859) to 8849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.272), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS82489.1 TMEM182 gene_id:130827|Hs108|chr2      ( 186) 1289 301.1 2.6e-82
CCDS2064.1 TMEM182 gene_id:130827|Hs108|chr2       ( 229) 1282 299.6 9.1e-82
CCDS82490.1 TMEM182 gene_id:130827|Hs108|chr2      ( 133)  873 206.6 5.3e-54


>>CCDS82489.1 TMEM182 gene_id:130827|Hs108|chr2           (186 aa)
 initn: 1289 init1: 1289 opt: 1289  Z-score: 1591.3  bits: 301.1 E(32554): 2.6e-82
Smith-Waterman score: 1289; 99.5% identity (99.5% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KE0 MIENVTFHHEGFFWRCWFNGIVEENDSNIWKFWYTNQPPSKNCTHAYLSPYPFMRGEHNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MIENVTFHHEGFFWRCWFNGIVEENDSNIWKFWYTNQPPSKNCTHAYLSPYPFMRGEHNS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TSYDSAVIYRGFWAVLMLLGVVAVVIASFLIICAAPFASHFLYKAGGGSYIAAGILFSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TSYDSAVIYRGFWAVLMLLGVVAVVIASFLIICAAPFASHFLYKAGGGSYIAAGILFSLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VMLYVIWVQAVADMESYRNMKMKDCLDFTPSVLYGWSFFLAPAGIFFSLLAGLLFLVVGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS82 VMLYVIWVQAVADMESYRNMKMKDCLDFTPSVLYGWSFFLAPAGIFFSLLAGLLFLVVGW
              130       140       150       160       170       180

             
pF1KE0 HIQIHH
       ::::::
CCDS82 HIQIHH
             

>>CCDS2064.1 TMEM182 gene_id:130827|Hs108|chr2            (229 aa)
 initn: 1282 init1: 1282 opt: 1282  Z-score: 1581.5  bits: 299.6 E(32554): 9.1e-82
Smith-Waterman score: 1282; 99.5% identity (99.5% similar) in 185 aa overlap (2-186:45-229)

                                            10        20        30 
pF1KE0                              MIENVTFHHEGFFWRCWFNGIVEENDSNIWK
                                     ::::::::::::::::::::::::::::::
CCDS20 ALGVLLFLVAFGSDYWLLATEVGRCSGEKNIENVTFHHEGFFWRCWFNGIVEENDSNIWK
           20        30        40        50        60        70    

              40        50        60        70        80        90 
pF1KE0 FWYTNQPPSKNCTHAYLSPYPFMRGEHNSTSYDSAVIYRGFWAVLMLLGVVAVVIASFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 FWYTNQPPSKNCTHAYLSPYPFMRGEHNSTSYDSAVIYRGFWAVLMLLGVVAVVIASFLI
           80        90       100       110       120       130    

             100       110       120       130       140       150 
pF1KE0 ICAAPFASHFLYKAGGGSYIAAGILFSLVVMLYVIWVQAVADMESYRNMKMKDCLDFTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ICAAPFASHFLYKAGGGSYIAAGILFSLVVMLYVIWVQAVADMESYRNMKMKDCLDFTPS
          140       150       160       170       180       190    

             160       170       180      
pF1KE0 VLYGWSFFLAPAGIFFSLLAGLLFLVVGRHIQIHH
       :::::::::::::::::::::::::::: ::::::
CCDS20 VLYGWSFFLAPAGIFFSLLAGLLFLVVGWHIQIHH
          200       210       220         

>>CCDS82490.1 TMEM182 gene_id:130827|Hs108|chr2           (133 aa)
 initn: 873 init1: 873 opt: 873  Z-score: 1083.0  bits: 206.6 E(32554): 5.3e-54
Smith-Waterman score: 873; 99.2% identity (99.2% similar) in 133 aa overlap (54-186:1-133)

            30        40        50        60        70        80   
pF1KE0 ENDSNIWKFWYTNQPPSKNCTHAYLSPYPFMRGEHNSTSYDSAVIYRGFWAVLMLLGVVA
                                     ::::::::::::::::::::::::::::::
CCDS82                               MRGEHNSTSYDSAVIYRGFWAVLMLLGVVA
                                             10        20        30

            90       100       110       120       130       140   
pF1KE0 VVIASFLIICAAPFASHFLYKAGGGSYIAAGILFSLVVMLYVIWVQAVADMESYRNMKMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VVIASFLIICAAPFASHFLYKAGGGSYIAAGILFSLVVMLYVIWVQAVADMESYRNMKMK
               40        50        60        70        80        90

           150       160       170       180      
pF1KE0 DCLDFTPSVLYGWSFFLAPAGIFFSLLAGLLFLVVGRHIQIHH
       :::::::::::::::::::::::::::::::::::: ::::::
CCDS82 DCLDFTPSVLYGWSFFLAPAGIFFSLLAGLLFLVVGWHIQIHH
              100       110       120       130   




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:02:44 2016 done: Thu Nov  3 06:02:44 2016
 Total Scan time:  1.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]