FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0468, 385 aa
  1>>>pF1KE0468 385 - 385 aa - 385 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1135+/-0.000795; mu= 8.8071+/- 0.048
 mean_var=107.6310+/-21.146, 0's: 0 Z-trim(110.9): 13  B-trim: 0 in 0/51
 Lambda= 0.123625
 statistics sampled from 11968 (11975) to 11968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.368), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS58662.1 C19orf47 gene_id:126526|Hs108|chr19    ( 422) 2416 441.2 7.9e-124


>>CCDS58662.1 C19orf47 gene_id:126526|Hs108|chr19         (422 aa)
 initn: 2416 init1: 2416 opt: 2416  Z-score: 2336.6  bits: 441.2 E(32554): 7.9e-124
Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:38-422)

                                             10        20        30
pF1KE0                               MVSVTMATSEWIQFFKEAGIPPGPAVNYAV
                                     ::::::::::::::::::::::::::::::
CCDS58 LVAACWGRAAADESVQLPAAPGSSVRARETMVSVTMATSEWIQFFKEAGIPPGPAVNYAV
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KE0 MFVDNRIQKSMLLDLNKEIMNELGVTVVGDIIAILKHAKVVHRQDMCKAATESVPCSPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MFVDNRIQKSMLLDLNKEIMNELGVTVVGDIIAILKHAKVVHRQDMCKAATESVPCSPSP
        70        80        90       100       110       120       

              100       110       120       130       140       150
pF1KE0 LAGEIRRGTSAASRMITNSLNHDSPPSTPPRRPDTSTSKISVTVSNKMAAKSAKATAALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LAGEIRRGTSAASRMITNSLNHDSPPSTPPRRPDTSTSKISVTVSNKMAAKSAKATAALA
       130       140       150       160       170       180       

              160       170       180       190       200       210
pF1KE0 RREEESLAVPAKRRRVTAEMEGKYVINMPKGTTPRTRKILEQQQAAKGLHRTSVFDRLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RREEESLAVPAKRRRVTAEMEGKYVINMPKGTTPRTRKILEQQQAAKGLHRTSVFDRLGA
       190       200       210       220       230       240       

              220       230       240       250       260       270
pF1KE0 ETKADTTTGSKPTGVFSRLGATPETDEDLAWDSDNDSSSSVLQYAGVLKKLGRGPAKASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ETKADTTTGSKPTGVFSRLGATPETDEDLAWDSDNDSSSSVLQYAGVLKKLGRGPAKASP
       250       260       270       280       290       300       

              280       290       300       310       320       330
pF1KE0 QPALTVKAKATSSATTAAAPTLRRLALSSRSGLERKPESLSKVSIIKRLGAAALVPEAQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QPALTVKAKATSSATTAAAPTLRRLALSSRSGLERKPESLSKVSIIKRLGAAALVPEAQD
       310       320       330       340       350       360       

              340       350       360       370       380     
pF1KE0 SQVTSTKSKSSAEVKVTIKRTLVGPRGSSSSEGLGAQMDHAGTVSVFKRLGRRTF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SQVTSTKSKSSAEVKVTIKRTLVGPRGSSSSEGLGAQMDHAGTVSVFKRLGRRTF
       370       380       390       400       410       420  




385 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:33:17 2016 done: Thu Nov  3 06:33:18 2016
 Total Scan time:  3.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]