FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0467, 217 aa
  1>>>pF1KE0467 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0376+/-0.000766; mu= 15.4266+/- 0.046
 mean_var=63.4370+/-12.915, 0's: 0 Z-trim(108.2): 2  B-trim: 370 in 1/50
 Lambda= 0.161029
 statistics sampled from 10071 (10073) to 10071 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.309), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS10574.1 COQ7 gene_id:10229|Hs108|chr16         ( 217) 1428 339.9 7.3e-94
CCDS53993.1 COQ7 gene_id:10229|Hs108|chr16         ( 179) 1172 280.4   5e-76


>>CCDS10574.1 COQ7 gene_id:10229|Hs108|chr16              (217 aa)
 initn: 1428 init1: 1428 opt: 1428  Z-score: 1798.7  bits: 339.9 E(32554): 7.3e-94
Smith-Waterman score: 1428; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KE0 MSCAGAAAAPRLWRLRPGARRSLSAYGRRTSVRFRSSGMTLDNISRAAVDRIIRVDHAGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSCAGAAAAPRLWRLRPGARRSLSAYGRRTSVRFRSSGMTLDNISRAAVDRIIRVDHAGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 YGANRIYAGQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YGANRIYAGQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALGAGTALLGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALGAGTALLGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELE
              130       140       150       160       170       180

              190       200       210       
pF1KE0 HHDIGLDHDAELAPAYAVLKSIIQAGCRVAIYLSERL
       :::::::::::::::::::::::::::::::::::::
CCDS10 HHDIGLDHDAELAPAYAVLKSIIQAGCRVAIYLSERL
              190       200       210       

>>CCDS53993.1 COQ7 gene_id:10229|Hs108|chr16              (179 aa)
 initn: 1172 init1: 1172 opt: 1172  Z-score: 1478.5  bits: 280.4 E(32554): 5e-76
Smith-Waterman score: 1172; 100.0% identity (100.0% similar) in 179 aa overlap (39-217:1-179)

       10        20        30        40        50        60        
pF1KE0 APRLWRLRPGARRSLSAYGRRTSVRFRSSGMTLDNISRAAVDRIIRVDHAGEYGANRIYA
                                     ::::::::::::::::::::::::::::::
CCDS53                               MTLDNISRAAVDRIIRVDHAGEYGANRIYA
                                             10        20        30

       70        80        90       100       110       120        
pF1KE0 GQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGFALGAGTAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGFALGAGTAL
               40        50        60        70        80        90

      130       140       150       160       170       180        
pF1KE0 LGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELEHHDIGLDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELEHHDIGLDH
              100       110       120       130       140       150

      190       200       210       
pF1KE0 DAELAPAYAVLKSIIQAGCRVAIYLSERL
       :::::::::::::::::::::::::::::
CCDS53 DAELAPAYAVLKSIIQAGCRVAIYLSERL
              160       170         




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:42:46 2016 done: Thu Nov  3 06:42:46 2016
 Total Scan time:  2.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]