FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0465, 219 aa
  1>>>pF1KE0465 219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.3264+/-0.00104; mu= -10.8511+/- 0.063
 mean_var=433.4813+/-86.933, 0's: 0 Z-trim(116.6): 21  B-trim: 0 in 0/55
 Lambda= 0.061601
 statistics sampled from 17207 (17219) to 17207 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.529), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS3535.1 PRR27 gene_id:401137|Hs108|chr4         ( 219) 1531 148.9 2.3e-36


>>CCDS3535.1 PRR27 gene_id:401137|Hs108|chr4              (219 aa)
 initn: 1531 init1: 1531 opt: 1531  Z-score: 766.2  bits: 148.9 E(32554): 2.3e-36
Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KE0 MKLLLWACIVCVAFARKRRFPFIGEDDNDDGHPLHPSLNIPYGIRNLPPPLYYRPVNTVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKLLLWACIVCVAFARKRRFPFIGEDDNDDGHPLHPSLNIPYGIRNLPPPLYYRPVNTVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SYPGNTYTDTGLPSYPWILTSPGFPYVYHIRGFPLATQLNVPPLPPRGFPFVPPSRFFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SYPGNTYTDTGLPSYPWILTSPGFPYVYHIRGFPLATQLNVPPLPPRGFPFVPPSRFFSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AAAPAAPPIAAEPAAAAPLTATPVAAEPAAGAPVAAEPAAEAPVGAEPAAEAPVAAEPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AAAPAAPPIAAEPAAAAPLTATPVAAEPAAGAPVAAEPAAEAPVGAEPAAEAPVAAEPAA
              130       140       150       160       170       180

              190       200       210         
pF1KE0 EAPVGVEPAAEEPSPAEPATAKPAAPEPHPSPSLEQANQ
       :::::::::::::::::::::::::::::::::::::::
CCDS35 EAPVGVEPAAEEPSPAEPATAKPAAPEPHPSPSLEQANQ
              190       200       210         




219 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:47:47 2016 done: Thu Nov  3 06:47:48 2016
 Total Scan time:  2.400 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]