FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0456, 274 aa
  1>>>pF1KE0456 274 - 274 aa - 274 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2600+/-0.000701; mu= 20.5149+/- 0.042
 mean_var=60.9139+/-12.548, 0's: 0 Z-trim(109.3): 26  B-trim: 54 in 1/47
 Lambda= 0.164330
 statistics sampled from 10750 (10761) to 10750 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.331), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS10667.2 FAM57B gene_id:83723|Hs108|chr16       ( 274) 1903 459.3 1.4e-129
CCDS81967.1 FAM57B gene_id:83723|Hs108|chr16       ( 224) 1589 384.7 3.1e-107
CCDS10996.1 FAM57A gene_id:79850|Hs108|chr17       ( 257)  579 145.3 4.1e-35
CCDS82031.1 FAM57A gene_id:79850|Hs108|chr17       ( 225)  377 97.4 9.7e-21


>>CCDS10667.2 FAM57B gene_id:83723|Hs108|chr16            (274 aa)
 initn: 1903 init1: 1903 opt: 1903  Z-score: 2440.0  bits: 459.3 E(32554): 1.4e-129
Smith-Waterman score: 1903; 99.6% identity (99.6% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KE0 MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCHRHKHQVKGHGGDDGAARAPGSTWA
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS10 TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCHWHKHQVKGHGGDDGAARAPGSTWA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL
              190       200       210       220       230       240

              250       260       270    
pF1KE0 LLAPQLYWFFLICRGACRLFWPRSRPPPACQAQD
       ::::::::::::::::::::::::::::::::::
CCDS10 LLAPQLYWFFLICRGACRLFWPRSRPPPACQAQD
              250       260       270    

>>CCDS81967.1 FAM57B gene_id:83723|Hs108|chr16            (224 aa)
 initn: 1589 init1: 1589 opt: 1589  Z-score: 2038.8  bits: 384.7 E(32554): 3.1e-107
Smith-Waterman score: 1589; 99.6% identity (99.6% similar) in 224 aa overlap (51-274:1-224)

               30        40        50        60        70        80
pF1KE0 NTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVSTSCKHIIDDQHWLSSAYTQF
                                     ::::::::::::::::::::::::::::::
CCDS81                               MASTAGYIVSTSCKHIIDDQHWLSSAYTQF
                                             10        20        30

               90       100       110       120       130       140
pF1KE0 AVPYFIYDIYAMFLCHRHKHQVKGHGGDDGAARAPGSTWAIARGYLHKEFLMVLHHAAMV
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS81 AVPYFIYDIYAMFLCHWHKHQVKGHGGDDGAARAPGSTWAIARGYLHKEFLMVLHHAAMV
               40        50        60        70        80        90

              150       160       170       180       190       200
pF1KE0 LVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVNGALMLLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVNGALMLLSF
              100       110       120       130       140       150

              210       220       230       240       250       260
pF1KE0 LCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAALLLAPQLYWFFLICRGACRLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAALLLAPQLYWFFLICRGACRLF
              160       170       180       190       200       210

              270    
pF1KE0 WPRSRPPPACQAQD
       ::::::::::::::
CCDS81 WPRSRPPPACQAQD
              220    

>>CCDS10996.1 FAM57A gene_id:79850|Hs108|chr17            (257 aa)
 initn: 817 init1: 573 opt: 579  Z-score: 743.9  bits: 145.3 E(32554): 4.1e-35
Smith-Waterman score: 852; 48.5% identity (72.1% similar) in 262 aa overlap (1-260:1-248)

               10        20        30        40        50        60
pF1KE0 MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS
       ::  ...:.. ::::: :   .:.:  :  : ..: :..:.::::::.:..:. .: .. 
CCDS10 MLLTLAGGALFFPGLFALCTWALRR-SQPGWSRTDCVMISTRLVSSVHAVLATGSGIVII
               10        20         30        40        50         

               70        80        90         100       110        
pF1KE0 TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCH--RHKHQVKGHGGDDGAARAPGST
        ::  .:  .:::.  :. : .::.::: :::.::.  : . :           :::. :
CCDS10 RSCDDVITGRHWLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQ----------NRAPSLT
      60        70        80        90       100                   

      120       130       140       150       160       170        
pF1KE0 WAIARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKIL
           :..: .. ::. :::....:  :..   :   ::::.::.. ::.::::: ::..:
CCDS10 ---LRNFLSRNRLMITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVL
        110       120       130       140       150       160      

      180       190       200       210       220       230        
pF1KE0 IQYKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGA
       :: :::::::.:::: : : .:: ::.::::..::.:::. :: :: ::..:: . :.. 
CCDS10 IQLKQQHTLLYKVNGILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVPFSIPFYCNVAN
        170       180       190       200       210       220      

      240       250       260       270    
pF1KE0 ALLLAPQLYWFFLICRGACRLFWPRSRPPPACQAQD
       :.:.:::.::: :.:: : :::              
CCDS10 AFLVAPQIYWFCLLCRKAVRLFDTPQAKKDG     
        230       240       250            

>>CCDS82031.1 FAM57A gene_id:79850|Hs108|chr17            (225 aa)
 initn: 621 init1: 377 opt: 377  Z-score: 485.8  bits: 97.4 E(32554): 9.7e-21
Smith-Waterman score: 655; 41.6% identity (63.0% similar) in 262 aa overlap (1-260:1-216)

               10        20        30        40        50        60
pF1KE0 MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS
       ::  ...:.. ::::: :   .:.:  :  : ..: :..:.::::::.:..:. .: .. 
CCDS82 MLLTLAGGALFFPGLFALCTWALRR-SQPGWSRTDCVMISTRLVSSVHAVLATGSGIVII
               10        20         30        40        50         

               70        80        90         100       110        
pF1KE0 TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCH--RHKHQVKGHGGDDGAARAPGST
        ::  .:  .:::.  :. : .::.::: :::.::.  : . :           :::. :
CCDS82 RSCDDVITGRHWLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQ----------NRAPSLT
      60        70        80        90       100                   

      120       130       140       150       160       170        
pF1KE0 WAIARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKIL
           :..: .. ::. :::....:  :..                               
CCDS82 ---LRNFLSRNRLMITHHAVILFVLVPVA-------------------------------
        110       120       130                                    

      180       190       200       210       220       230        
pF1KE0 IQYKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGA
        : :::::::.:::: : : .:: ::.::::..::.:::. :: :: ::..:: . :.. 
CCDS82 -QLKQQHTLLYKVNGILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVPFSIPFYCNVAN
          140       150       160       170       180       190    

      240       250       260       270    
pF1KE0 ALLLAPQLYWFFLICRGACRLFWPRSRPPPACQAQD
       :.:.:::.::: :.:: : :::              
CCDS82 AFLVAPQIYWFCLLCRKAVRLFDTPQAKKDG     
          200       210       220          




274 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:39:49 2016 done: Thu Nov  3 07:39:50 2016
 Total Scan time:  2.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]