FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0455, 226 aa
  1>>>pF1KE0455 226 - 226 aa - 226 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5795+/-0.000626; mu= 17.7739+/- 0.038
 mean_var=54.3262+/-10.809, 0's: 0 Z-trim(110.1): 17  B-trim: 46 in 1/49
 Lambda= 0.174008
 statistics sampled from 11382 (11392) to 11382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.35), width:  16
 Scan time:  1.630

The best scores are:                                      opt bits E(32554)
CCDS6275.1 LAPTM4B gene_id:55353|Hs108|chr8        ( 317) 1537 393.2 9.8e-110
CCDS1696.1 LAPTM4A gene_id:9741|Hs108|chr2         ( 233)  720 188.1 4.2e-48


>>CCDS6275.1 LAPTM4B gene_id:55353|Hs108|chr8             (317 aa)
 initn: 1537 init1: 1537 opt: 1537  Z-score: 2083.6  bits: 393.2 E(32554): 9.8e-110
Smith-Waterman score: 1537; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:92-317)

                                             10        20        30
pF1KE0                               MKMVAPWTRFYSNSCCLCCHVRTGTILLGV
                                     ::::::::::::::::::::::::::::::
CCDS62 SRQQRRGGLQARRSTLLKTCARARATAPGAMKMVAPWTRFYSNSCCLCCHVRTGTILLGV
              70        80        90       100       110       120 

               40        50        60        70        80        90
pF1KE0 WYLIINAVVLLILLSALADPDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 WYLIINAVVLLILLSALADPDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMAT
             130       140       150       160       170       180 

              100       110       120       130       140       150
pF1KE0 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVN
             190       200       210       220       230       240 

              160       170       180       190       200       210
pF1KE0 PTCLVLIILLFISIILTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 PTCLVLIILLFISIILTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDA
             250       260       270       280       290       300 

              220      
pF1KE0 TVNGAAKEPPPPYVSA
       ::::::::::::::::
CCDS62 TVNGAAKEPPPPYVSA
             310       

>>CCDS1696.1 LAPTM4A gene_id:9741|Hs108|chr2              (233 aa)
 initn: 738 init1: 300 opt: 720  Z-score: 977.1  bits: 188.1 E(32554): 4.2e-48
Smith-Waterman score: 720; 45.5% identity (75.9% similar) in 224 aa overlap (9-226:13-233)

                   10        20        30        40        50      
pF1KE0     MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPDQY---
                   ::::. :: :::::::::.::.::...: .. ..:   .. :...   
CCDS16 MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV
               10        20        30        40        50        60

            60          70        80        90       100       110 
pF1KE0 NFSSSELGGDF--EFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFD
       :..   .:. .  : : : : :. .:.:.::..: .: .::: . ...:.::::::..::
CCDS16 NIQYEVIGNYYSSERMAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFD
               70         80        90       100       110         

             120       130       140       150       160       170 
pF1KE0 FALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGY
       :.:. ::::. : :   :.::. ::: .:::.::..... .::..:.:.:..... ::.:
CCDS16 FVLSCLVAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAY
     120       130       140        150       160       170        

             180       190        200       210       220      
pF1KE0 LISCVWNCYRYINGRNSSDVLVY-VTSNDTTVLLPPYDDATVNGAAKEPPPPYVSA
       ::.::::::.:::.::  .. :: .       .:: :. : :.   :::::::. :
CCDS16 LINCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMA-VKMPEKEPPPPYLPA
      180       190       200       210        220       230   




226 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:41:49 2016 done: Thu Nov  3 07:41:49 2016
 Total Scan time:  1.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]