FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0444, 277 aa
  1>>>pF1KE0444 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6022+/-0.000375; mu= 10.2395+/- 0.023
 mean_var=115.4479+/-23.453, 0's: 0 Z-trim(116.5): 3  B-trim: 1081 in 1/54
 Lambda= 0.119366
 statistics sampled from 27783 (27786) to 27783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.326), width:  16
 Scan time:  7.520

The best scores are:                                      opt bits E(85289)
NP_878272 (OMIM: 608249) E3 ubiquitin-protein liga ( 277) 1851 329.3 4.9e-90
NP_878269 (OMIM: 608249) E3 ubiquitin-protein liga ( 277) 1851 329.3 4.9e-90
NP_067001 (OMIM: 608249) E3 ubiquitin-protein liga ( 277) 1851 329.3 4.9e-90


>>NP_878272 (OMIM: 608249) E3 ubiquitin-protein ligase C  (277 aa)
 initn: 1851 init1: 1851 opt: 1851  Z-score: 1737.4  bits: 329.3 E(85289): 4.9e-90
Smith-Waterman score: 1851; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE0 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
              190       200       210       220       230       240

              250       260       270       
pF1KE0 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
       :::::::::::::::::::::::::::::::::::::
NP_878 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
              250       260       270       

>>NP_878269 (OMIM: 608249) E3 ubiquitin-protein ligase C  (277 aa)
 initn: 1851 init1: 1851 opt: 1851  Z-score: 1737.4  bits: 329.3 E(85289): 4.9e-90
Smith-Waterman score: 1851; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE0 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_878 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
              190       200       210       220       230       240

              250       260       270       
pF1KE0 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
       :::::::::::::::::::::::::::::::::::::
NP_878 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
              250       260       270       

>>NP_067001 (OMIM: 608249) E3 ubiquitin-protein ligase C  (277 aa)
 initn: 1851 init1: 1851 opt: 1851  Z-score: 1737.4  bits: 329.3 E(85289): 4.9e-90
Smith-Waterman score: 1851; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE0 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
              190       200       210       220       230       240

              250       260       270       
pF1KE0 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
       :::::::::::::::::::::::::::::::::::::
NP_067 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
              250       260       270       




277 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:37:17 2016 done: Thu Nov  3 08:37:18 2016
 Total Scan time:  7.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]