FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0444, 277 aa
  1>>>pF1KE0444 277 - 277 aa - 277 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6541+/-0.000899; mu= 9.5954+/- 0.054
 mean_var=105.8674+/-21.305, 0's: 0 Z-trim(109.1): 5  B-trim: 503 in 1/51
 Lambda= 0.124650
 statistics sampled from 10688 (10689) to 10688 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.328), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS9547.1 CCNB1IP1 gene_id:57820|Hs108|chr14      ( 277) 1851 343.1 1.3e-94


>>CCDS9547.1 CCNB1IP1 gene_id:57820|Hs108|chr14           (277 aa)
 initn: 1851 init1: 1851 opt: 1851  Z-score: 1812.0  bits: 343.1 E(32554): 1.3e-94
Smith-Waterman score: 1851; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KE0 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MSLCEDMLLCNYRKCRIKLSGYAWVTACSHIFCDQHGSGEFSRSPAICPACNSTLSGKLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 IVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MEKIYTQQIQSKDVELTSMKGEVTSMKKVLEEYKKKFSDISEKLMERNRQYQKLQGLYDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LRLRNITIANHEGTLEPSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFA
              190       200       210       220       230       240

              250       260       270       
pF1KE0 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
       :::::::::::::::::::::::::::::::::::::
CCDS95 GSPTAPEPSNSFFSFVSPSRELEQQQVSSRAFKVKRI
              250       260       270       




277 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:37:16 2016 done: Thu Nov  3 08:37:17 2016
 Total Scan time:  2.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]