FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0441, 233 aa
  1>>>pF1KE0441 233 - 233 aa - 233 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0217+/-0.000798; mu= 8.5883+/- 0.048
 mean_var=139.0363+/-27.163, 0's: 0 Z-trim(112.7): 7  B-trim: 13 in 1/52
 Lambda= 0.108770
 statistics sampled from 13444 (13447) to 13444 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.413), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS1323.1 TEX35 gene_id:84066|Hs108|chr1          ( 233) 1563 255.8 1.8e-68
CCDS53433.1 TEX35 gene_id:84066|Hs108|chr1         ( 212) 1312 216.3 1.2e-56
CCDS53434.1 TEX35 gene_id:84066|Hs108|chr1         ( 215) 1294 213.5 8.7e-56


>>CCDS1323.1 TEX35 gene_id:84066|Hs108|chr1               (233 aa)
 initn: 1563 init1: 1563 opt: 1563  Z-score: 1342.7  bits: 255.8 E(32554): 1.8e-68
Smith-Waterman score: 1563; 99.6% identity (99.6% similar) in 233 aa overlap (1-233:1-233)

               10        20        30        40        50        60
pF1KE0 MSAKRAELKKTHLCKNYKAVCLELKPEPTKTFDYKAVKQEGRFTKAGVTQDLKNELREVR
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSAKRAELKKTHLSKNYKAVCLELKPEPTKTFDYKAVKQEGRFTKAGVTQDLKNELREVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EELKEKMEEIKQIKDLMDKDFDKLHEFVEIMKEMQKDMDEKMDILINTQKNYKLPLRRAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EELKEKMEEIKQIKDLMDKDFDKLHEFVEIMKEMQKDMDEKMDILINTQKNYKLPLRRAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KEQQELRLMGKTHREPQLRPKKMDGASGVNGAPCALHKKTMAPQKTKQGSLDPLHHCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KEQQELRLMGKTHREPQLRPKKMDGASGVNGAPCALHKKTMAPQKTKQGSLDPLHHCGTC
              130       140       150       160       170       180

              190       200       210       220       230   
pF1KE0 CEKCLLCALKNNYNRGNIPSEASGLYKGGEEPVTTQPSVGHAVPAPKSQTEGR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CEKCLLCALKNNYNRGNIPSEASGLYKGGEEPVTTQPSVGHAVPAPKSQTEGR
              190       200       210       220       230   

>>CCDS53433.1 TEX35 gene_id:84066|Hs108|chr1              (212 aa)
 initn: 1310 init1: 1310 opt: 1312  Z-score: 1130.4  bits: 216.3 E(32554): 1.2e-56
Smith-Waterman score: 1312; 96.6% identity (98.0% similar) in 203 aa overlap (1-200:1-203)

               10        20        30        40        50        60
pF1KE0 MSAKRAELKKTHLCKNYKAVCLELKPEPTKTFDYKAVKQEGRFTKAGVTQDLKNELREVR
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSAKRAELKKTHLSKNYKAVCLELKPEPTKTFDYKAVKQEGRFTKAGVTQDLKNELREVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EELKEKMEEIKQIKDLMDKDFDKLHEFVEIMKEMQKDMDEKMDILINTQKNYKLPLRRAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EELKEKMEEIKQIKDLMDKDFDKLHEFVEIMKEMQKDMDEKMDILINTQKNYKLPLRRAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KEQQELRLMGKTHREPQLRPKKMDGASGVNGAPCALHKKTMAPQKTKQGSLDPLHHCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KEQQELRLMGKTHREPQLRPKKMDGASGVNGAPCALHKKTMAPQKTKQGSLDPLHHCGTC
              130       140       150       160       170       180

              190          200       210       220       230   
pF1KE0 CEKCLLCALKNNYNRG---NIPSEASGLYKGGEEPVTTQPSVGHAVPAPKSQTEGR
       :::::::::::::::.   :.:.                                 
CCDS53 CEKCLLCALKNNYNRAQLQNLPAVPIHHLQAP                        
              190       200       210                          

>>CCDS53434.1 TEX35 gene_id:84066|Hs108|chr1              (215 aa)
 initn: 1308 init1: 1239 opt: 1294  Z-score: 1115.0  bits: 213.5 E(32554): 8.7e-56
Smith-Waterman score: 1294; 96.1% identity (96.1% similar) in 204 aa overlap (1-196:1-204)

               10                20        30        40        50  
pF1KE0 MSAKRAELKKTHL-----C---KNYKAVCLELKPEPTKTFDYKAVKQEGRFTKAGVTQDL
       :::::::::::::     :   ::::::::::::::::::::::::::::::::::::::
CCDS53 MSAKRAELKKTHLVKERHCWTSKNYKAVCLELKPEPTKTFDYKAVKQEGRFTKAGVTQDL
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE0 KNELREVREELKEKMEEIKQIKDLMDKDFDKLHEFVEIMKEMQKDMDEKMDILINTQKNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KNELREVREELKEKMEEIKQIKDLMDKDFDKLHEFVEIMKEMQKDMDEKMDILINTQKNY
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KE0 KLPLRRAPKEQQELRLMGKTHREPQLRPKKMDGASGVNGAPCALHKKTMAPQKTKQGSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KLPLRRAPKEQQELRLMGKTHREPQLRPKKMDGASGVNGAPCALHKKTMAPQKTKQGSLD
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KE0 PLHHCGTCCEKCLLCALKNNYNRGNIPSEASGLYKGGEEPVTTQPSVGHAVPAPKSQTEG
       ::::::::::::::::::::::::                                    
CCDS53 PLHHCGTCCEKCLLCALKNNYNRGIYAAVGLLDLW                         
              190       200       210                              




233 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:42:25 2016 done: Thu Nov  3 08:42:25 2016
 Total Scan time:  2.420 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]