FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0437, 310 aa
  1>>>pF1KE0437 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.6042+/-0.00101; mu= -12.7583+/- 0.061
 mean_var=305.4489+/-63.161, 0's: 0 Z-trim(114.3): 23  B-trim: 2 in 1/53
 Lambda= 0.073385
 statistics sampled from 14837 (14852) to 14837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.456), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS47077.1 PARM1 gene_id:25849|Hs108|chr4         ( 310) 1997 224.2 9.8e-59


>>CCDS47077.1 PARM1 gene_id:25849|Hs108|chr4              (310 aa)
 initn: 1997 init1: 1997 opt: 1997  Z-score: 1168.0  bits: 224.2 E(32554): 9.8e-59
Smith-Waterman score: 1997; 99.7% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE0 MVYKTLFALCILTAGWRVQSLPTSAPLSVSLPTNIVPPTTIWTSSPQNTDADTASPSNGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MVYKTLFALCILTAGWRVQSLPTSAPLSVSLPTNIVPPTTIWTSSPQNTDADTASPSNGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HNNSVLPVTASAPTSLLPKNISIESREEEITSPGSNWEGTNTDPSPSGFSSTSGGVHLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HNNSVLPVTASAPTSLLPKNISIESREEEITSPGSNWEGTNTDPSPSGFSSTSGGVHLTT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 TLKEHSSGTPEAGVAATLSQSAAEPPTLISPQAPASSPSSLSTSPPEVFSASVTTNHSST
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TLEEHSSGTPEAGVAATLSQSAAEPPTLISPQAPASSPSSLSTSPPEVFSASVTTNHSST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VTSTQPTGAPTAPESPTEESSSDHTPTSHATAEPVPQEKTPPTTVSGKVMCELIDMETTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VTSTQPTGAPTAPESPTEESSSDHTPTSHATAEPVPQEKTPPTTVSGKVMCELIDMETTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 TFPRVIMQEVEHALSSGSIAAITVTVIAVVLLVFGVAAYLKIRHSSYGRLLDDHDYGSWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TFPRVIMQEVEHALSSGSIAAITVTVIAVVLLVFGVAAYLKIRHSSYGRLLDDHDYGSWG
              250       260       270       280       290       300

              310
pF1KE0 NYNNPLYDDS
       ::::::::::
CCDS47 NYNNPLYDDS
              310




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:00:41 2016 done: Thu Nov  3 09:00:41 2016
 Total Scan time:  2.840 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]