FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0434, 315 aa
  1>>>pF1KE0434 315 - 315 aa - 315 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3937+/-0.00036; mu= 15.6882+/- 0.023
 mean_var=67.4843+/-13.661, 0's: 0 Z-trim(114.9): 30  B-trim: 1545 in 2/51
 Lambda= 0.156125
 statistics sampled from 24946 (24963) to 24946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.293), width:  16
 Scan time:  6.780

The best scores are:                                      opt bits E(85289)
NP_078942 (OMIM: 148600,614888) alpha- and gamma-a ( 315) 2046 469.5 3.9e-132
NP_001258815 (OMIM: 148600,614888) alpha- and gamm ( 206) 1345 311.5 9.2e-85
NP_001258814 (OMIM: 148600,614888) alpha- and gamm ( 206) 1345 311.5 9.2e-85
XP_011520322 (OMIM: 148600,614888) PREDICTED: alph ( 206) 1345 311.5 9.2e-85


>>NP_078942 (OMIM: 148600,614888) alpha- and gamma-adapt  (315 aa)
 initn: 2046 init1: 2046 opt: 2046  Z-score: 2493.3  bits: 469.5 E(85289): 3.9e-132
Smith-Waterman score: 2046; 97.8% identity (98.7% similar) in 315 aa overlap (1-315:1-315)

               10        20        30        40        50        60
pF1KE0 MAAGVPCALVTSCSSVFSGDQLVQHTLGTEDLIAEVTSNDAVRFYPWTIDNKYYSADINL
       ::::::::::::::::::::::::: :::::::.::::::::::::::::::::::::::
NP_078 MAAGVPCALVTSCSSVFSGDQLVQHILGTEDLIVEVTSNDAVRFYPWTIDNKYYSADINL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CVVPNKFLVTAEIAESVQAFVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSED
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_078 CVVPNKFLVTAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAKAWLPEVMILVCDRVSED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GINRQKAQEWSLKHGFELVELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDR
       :::::::::: .::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 GINRQKAQEWCIKHGFELVELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MLDLDIQELASLTTGGGDVENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIG
       :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
NP_078 MLDLDIQELASLTTGGGDVENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIG
              250       260       270       280       290       300

              310     
pF1KE0 GDRDEIEGLSSDGEH
       :::::::::::: ::
NP_078 GDRDEIEGLSSDEEH
              310     

>>NP_001258815 (OMIM: 148600,614888) alpha- and gamma-ad  (206 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1642.8  bits: 311.5 E(85289): 9.2e-85
Smith-Waterman score: 1345; 98.1% identity (98.5% similar) in 206 aa overlap (110-315:1-206)

      80        90       100       110       120       130         
pF1KE0 FVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSEDGINRQKAQEWSLKHGFELV
                                     ::::::::::::::::::::: .:::::::
NP_001                               MILVCDRVSEDGINRQKAQEWCIKHGFELV
                                             10        20        30

     140       150       160       170       180       190         
pF1KE0 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
               40        50        60        70        80        90

     200       210       220       230       240       250         
pF1KE0 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
              100       110       120       130       140       150

     260       270       280       290       300       310     
pF1KE0 ENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDGEH
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::: ::
NP_001 ENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDEEH
              160       170       180       190       200      

>>NP_001258814 (OMIM: 148600,614888) alpha- and gamma-ad  (206 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1642.8  bits: 311.5 E(85289): 9.2e-85
Smith-Waterman score: 1345; 98.1% identity (98.5% similar) in 206 aa overlap (110-315:1-206)

      80        90       100       110       120       130         
pF1KE0 FVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSEDGINRQKAQEWSLKHGFELV
                                     ::::::::::::::::::::: .:::::::
NP_001                               MILVCDRVSEDGINRQKAQEWCIKHGFELV
                                             10        20        30

     140       150       160       170       180       190         
pF1KE0 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
               40        50        60        70        80        90

     200       210       220       230       240       250         
pF1KE0 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
              100       110       120       130       140       150

     260       270       280       290       300       310     
pF1KE0 ENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDGEH
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::: ::
NP_001 ENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDEEH
              160       170       180       190       200      

>>XP_011520322 (OMIM: 148600,614888) PREDICTED: alpha- a  (206 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1642.8  bits: 311.5 E(85289): 9.2e-85
Smith-Waterman score: 1345; 98.1% identity (98.5% similar) in 206 aa overlap (110-315:1-206)

      80        90       100       110       120       130         
pF1KE0 FVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSEDGINRQKAQEWSLKHGFELV
                                     ::::::::::::::::::::: .:::::::
XP_011                               MILVCDRVSEDGINRQKAQEWCIKHGFELV
                                             10        20        30

     140       150       160       170       180       190         
pF1KE0 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
               40        50        60        70        80        90

     200       210       220       230       240       250         
pF1KE0 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
              100       110       120       130       140       150

     260       270       280       290       300       310     
pF1KE0 ENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDGEH
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::: ::
XP_011 ENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDEEH
              160       170       180       190       200      




315 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:21:09 2016 done: Thu Nov  3 09:21:10 2016
 Total Scan time:  6.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]