FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0434, 315 aa
  1>>>pF1KE0434 315 - 315 aa - 315 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5307+/-0.000821; mu= 14.7448+/- 0.050
 mean_var=67.7959+/-13.383, 0's: 0 Z-trim(107.7): 26  B-trim: 332 in 1/51
 Lambda= 0.155766
 statistics sampled from 9740 (9749) to 9740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.299), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS42050.1 AAGAB gene_id:79719|Hs108|chr15        ( 315) 2046 468.5  3e-132
CCDS61679.1 AAGAB gene_id:79719|Hs108|chr15        ( 206) 1345 310.9 5.5e-85


>>CCDS42050.1 AAGAB gene_id:79719|Hs108|chr15             (315 aa)
 initn: 2046 init1: 2046 opt: 2046  Z-score: 2487.7  bits: 468.5 E(32554): 3e-132
Smith-Waterman score: 2046; 97.8% identity (98.7% similar) in 315 aa overlap (1-315:1-315)

               10        20        30        40        50        60
pF1KE0 MAAGVPCALVTSCSSVFSGDQLVQHTLGTEDLIAEVTSNDAVRFYPWTIDNKYYSADINL
       ::::::::::::::::::::::::: :::::::.::::::::::::::::::::::::::
CCDS42 MAAGVPCALVTSCSSVFSGDQLVQHILGTEDLIVEVTSNDAVRFYPWTIDNKYYSADINL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CVVPNKFLVTAEIAESVQAFVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSED
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS42 CVVPNKFLVTAEIAESVQAFVVYFDSTQKSGLDSVSSWLPLAKAWLPEVMILVCDRVSED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GINRQKAQEWSLKHGFELVELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDR
       :::::::::: .::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GINRQKAQEWCIKHGFELVELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NQGFSLLNSLTGTNHSIGSADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 MLDLDIQELASLTTGGGDVENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIG
       :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS42 MLDLDIQELASLTTGGGDVENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIG
              250       260       270       280       290       300

              310     
pF1KE0 GDRDEIEGLSSDGEH
       :::::::::::: ::
CCDS42 GDRDEIEGLSSDEEH
              310     

>>CCDS61679.1 AAGAB gene_id:79719|Hs108|chr15             (206 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1639.2  bits: 310.9 E(32554): 5.5e-85
Smith-Waterman score: 1345; 98.1% identity (98.5% similar) in 206 aa overlap (110-315:1-206)

      80        90       100       110       120       130         
pF1KE0 FVVYFDSTRKSGLDSVSSWLPLAKAWLPEVMILVCDRVSEDGINRQKAQEWSLKHGFELV
                                     ::::::::::::::::::::: .:::::::
CCDS61                               MILVCDRVSEDGINRQKAQEWCIKHGFELV
                                             10        20        30

     140       150       160       170       180       190         
pF1KE0 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ELSPEELPEEDDDFPESTGVKRIVQALNANVWSNVVMKNDRNQGFSLLNSLTGTNHSIGS
               40        50        60        70        80        90

     200       210       220       230       240       250         
pF1KE0 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ADPCHPEQPHLPAADSTESLSDHRGGASNTTDAQVDSIVDPMLDLDIQELASLTTGGGDV
              100       110       120       130       140       150

     260       270       280       290       300       310     
pF1KE0 ENFERPFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDGEH
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS61 ENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGGDRDEIEGLSSDEEH
              160       170       180       190       200      




315 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:21:09 2016 done: Thu Nov  3 09:21:09 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]